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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54140 | AT | Annotation by Michelle Graham. TAIR10: peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570 | SoyBase | E_val: 0 | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0006857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligopeptide transport | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0042938 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dipeptide transport | SoyBase | N/A | ISS |
| GO:0042939 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tripeptide transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0042937 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tripeptide transporter activity | SoyBase | N/A | ISS |
| KOG1237 | KOG | H+/oligopeptide symporter | JGI | ISS | |
| PTHR11654 | Panther | OLIGOPEPTIDE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11654:SF37 | Panther | OLIGOPEPTIDE TRANSPORTER-RELATED | JGI | ISS | |
| PF00854 | PFAM | POT family | JGI | ISS | |
| UniRef100_B9S358 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9S358_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LLE9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLE9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g23370 not represented in the dataset |
Glyma11g23370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g176800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g23370.1 sequence type=CDS gene model=Glyma11g23370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGGATGATGGTTACACAAAAGATGGAACAGTAGATTACTGTGGAAATCCAGCTAATAAAAAGGAAACTGGAACCTGGAAAGCCTGCCCCTTTATCTTAGGAAATGAATGTTGTGAAAGATTGGCTTATTATGGGATGAGCACAAACCTGGTGCTTTATTTTAAGAAGCGGCTACATCAGCATAGTGCTATTGCTTCCAAGAATGTCTCTAATTGGAGTGGAACTTGCTATATCACACCATTGGTTGGAGCATTTTTGGCTGATTCCTACCTTGGAAGATATTGGACAATTGCTGTTTTTTCAATAATTTATGCTATTGGAATGACACTGTTGACATTGTCTGCGTCAGTTCCTGGCATAAAACCAACATGTCATGGACATGGAGATGAAAACTGTCATGCTACTACTCTAGAGAGTGCAGTGTGCTTCCTAGCTCTTTACCTTATTGCTCTTGGCACCGGCGGCATTAAGCCTTGTGTCTCATCCTATGGAGCAGATCAGTTTGATGACACTGACCCTGCTGAGAAGGAACACAAGAGTTCTTTCTTCAATTGGTTCTATTTCTCAATCAACATTGGTGCTCTTATTGCATCTTCTCTATTAGTTTGGATACAAGATAATGTGGGTTGGGGATGGGGATTTGGTATTCCTGCTGTAGCCATGGCAATTGCCGTGGTGAGTTTCTTTTCAGGCACTAGGTTGTATAGGAATCAGAAGCCTGGAGGCAGTGCCCTCACTAGAATCTGTCAGGTGGTAGTGGCATCCATAAGAAAGTACAAGGTTGAAGTACCTGCTGATGAGTCACTTTTATATGAGACTGCTGAAACTGAGTCTGCTATAAAAGGAAGCCGAAAGCTTGATCACACAGATGAGTTAAGATTTTTTGACAAAGCAACAGTGCTAGCACGGTCAGATAAAGTGAAGGAATCAACAAACCCTTGGAGACTTTGCACTGTAACTCAAGTGGAAGAGCTGAAATCCATTTTAAGATTACTTCCTGTATGGGCAACCGGCATCATATTTTCCACTGTCTATGGTCAGATGAGCACCTTATTTGTGTTGCAAGGACAAACCATGGACACTCGTGTTGGCAACTCCACTTTCAAAATCCCACCAGCTTCACTTTCAATCTTTGACACCCTCAGTGTCATATTTTGGGTCCCAGTGTATGACAGGATCATTGTGCCAATTGCTAGAAAGTTCACCGGGTACAAAAACGGCCTAACTCAGCTCCAAAGAATGGGAATTGGCCTCTTCATATCCATATTTTCCATGGTAGCAGCAGCAATATTGGAGCTCATAAGGCTTAGAATGGTGAGGAGGCATGATTACTATCAACTTGAGGAGATACCAATGACAATATTTTGGCAGGTTCCTCAATATTTCGTCATAGGCTGTGCAGAAGTCTTCTATTTCATTGGTCAGTTGGAGTTCTTCTATGAGCAAGCCCCTGATGCCATGAGAAGTTTTTGTTCTGCTCTCTCACTCACCACCGTCGCTCTCGGACAGTACTTGAGCTCTCTTCTTGTGACAATTGTGACAAAGATCACCACTAGGAATGGACGTCCTGGGTGGATACCTGATAATCTGAACTTCGGTCACATAGATTATTTCTTCTGGCTATTGGCATTGCTAAGTGTGGTGAACTTGATAGCATTCCTTGTAGTGTCTATGTTGTATACATATAAGAGGCCTGTGGGAACTCTGCGCTGA
>Glyma11g23370.1 sequence type=predicted peptide gene model=Glyma11g23370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDDGYTKDGTVDYCGNPANKKETGTWKACPFILGNECCERLAYYGMSTNLVLYFKKRLHQHSAIASKNVSNWSGTCYITPLVGAFLADSYLGRYWTIAVFSIIYAIGMTLLTLSASVPGIKPTCHGHGDENCHATTLESAVCFLALYLIALGTGGIKPCVSSYGADQFDDTDPAEKEHKSSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQKPGGSALTRICQVVVASIRKYKVEVPADESLLYETAETESAIKGSRKLDHTDELRFFDKATVLARSDKVKESTNPWRLCTVTQVEELKSILRLLPVWATGIIFSTVYGQMSTLFVLQGQTMDTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIARKFTGYKNGLTQLQRMGIGLFISIFSMVAAAILELIRLRMVRRHDYYQLEEIPMTIFWQVPQYFVIGCAEVFYFIGQLEFFYEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKITTRNGRPGWIPDNLNFGHIDYFFWLLALLSVVNLIAFLVVSMLYTYKRPVGTLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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