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Report for Sequence Feature Glyma11g22950

Feature Type:gene_model
Chromosome:Gm11
Start:20397352
stop:20397616
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g22950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42970AT Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein | chr5:17237470-17240649 REVERSE LENGTH=397 SoyBaseE_val: 8.00E-23ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0010100GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008180GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signalosome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_B9R7R6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cop9 complex subunit, putative n=1 Tax=Ricinus communis RepID=B9R7R6_RICCO SoyBaseE_val: 2.00E-23ISS
UniRef100_I1N6P8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6P8_SOYBN SoyBaseE_val: 3.00E-25ISS

Expression Patterns of Glyma11g22950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g22950 not represented in the dataset
Glyma11g22950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g22950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma11g22950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g22950
>Glyma11g22950.1   sequence type=CDS   gene model=Glyma11g22950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGTTATTAGAGAGAAACTTGCTGAGCTTTATGAATCTGAGAAACAATGGTCAAAAGCAGCTCAAATGCTTAGTGGTATTGACCTTGATTCAGGAATGAGGGTGATTGATGATGCATTCAGGTTGTCAAAGTGTGTCCAAATTGCT
Predicted protein sequences of Glyma11g22950
>Glyma11g22950.1   sequence type=predicted peptide   gene model=Glyma11g22950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LVIREKLAELYESEKQWSKAAQMLSGIDLDSGMRVIDDAFRLSKCVQIA






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