Glyma11g21616 - SoyBase

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Report for Sequence Feature Glyma11g21616

Feature Type:	gene_model
Chromosome:	Gm11
Start:	18750279
stop:	18750868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g21616

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF02095	PFAM	Extensin-like protein repeat	JGI		ISS
UniRef100_P15642	UniRef	Annotation by Michelle Graham. Best UniRef hit: Repetitive proline-rich cell wall protein 3 n=2 Tax=Glycine max RepID=PRP3_SOYBN	SoyBase	E_val: 3.00E-48	ISS
UniRef100_P15642	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Repetitive proline-rich cell wall protein 3 n=2 Tax=Glycine max RepID=PRP3_SOYBN	SoyBase	E_val: 3.00E-48	ISS

Expression Patterns of Glyma11g21616

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g21616 not represented in the dataset	Glyma11g21616 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g21616 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g154900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g21616

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g21616

Limit To All Plant Sequences

>Glyma11g21616.1   sequence type=CDS   gene model=Glyma11g21616   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTTTGTATCCTTCCTAGTGCTGCTTCTTGCAGCCCTTATCCTCATGCCTCAAGGGCTTGCTACTTACTACAAACCAATTAAGAAGCCACCAGTGTACAAGCCTCCAGTGTACAAGCCACCAGTGTACAAACCACCGGTTTATAAGCCAAAACCACCGGTTTACAAGCCGAAACCACCGGTTTACAAGCCACCATATAAGAAGCCACCATACAAGAAACCACCTTATGGAAAGTACCCTCCAGTAGAGGACAACACCCATGCCTAA

Predicted protein sequences of Glyma11g21616

Limit To All Plant Sequences

>Glyma11g21616.1   sequence type=predicted peptide   gene model=Glyma11g21616   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFVSFLVLLLAALILMPQGLATYYKPIKKPPVYKPPVYKPPVYKPPVYKPKPPVYKPKPPVYKPPYKKPPYKKPPYGKYPPVEDNTHA*

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