Glyma11g21515 - SoyBase

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Report for Sequence Feature Glyma11g21515

Feature Type:	gene_model
Chromosome:	Gm11
Start:	18525107
stop:	18542638
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g21515

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07940	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent ARF-type GTPase activating protein family \| chr3:2529542-2531368 FORWARD LENGTH=385	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1030	KOG	Predicted Ca2+-dependent phospholipid-binding protein	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF25	Panther	CENTAURIN/ARF-RELATED	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_G7IYV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7IYV8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LLC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LLC5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g21515

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g21515 not represented in the dataset	Glyma11g21515 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g21515 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g154100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g21515

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g21515

Limit To All Plant Sequences

>Glyma11g21515.2   sequence type=transcript   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCAATGTGTGTTGCTTAAATATTTGTTAATTTGTCGTGAAGAAGATTTAACACGCCCCATGTGAGCGCGTTCAAGTATTTTTCTCTCTGAACAATAATGTTCTATGGTGGGTAAAACATTCATCATCGCAACAATTTCAATCCCAATAATCATTAGTTCTCACATTGACTTTTGATCCCCAATGTTCTCGATCCATTTCCTTAAAATCAAAATAAGAAACTATGCAATTTGCCAGAACACAGATTCCAAGAATAATTACTGTCCCATTTTCAAAATCCCTATTTACTATTTAGTTTTCATTTCAAATTCTTTTTAGTTTTTTCAATGCAATTTTCCCAAATTTTCCCAGTTTCATCTTCAAGAGACTTCTAAGCTGCCCATGACTCATGCCCAATTTAAAATGAGAAAGGAAATAATTTGACATAGAGGTGATTGACAAACATATGGCTATTCTCAAATTGTAGCCTCAATTTTTTTGACTTGGTTTCAAATATTGGATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATGCCAATGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATAGTCAAGTTCTTAGAGATCGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGATAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATCAGACCCAAAATGGGTGTCTTCAAATAATGGAGTATTTATTTGCATCAAATGCTCTGGTGTACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAATTTGGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGAATATTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCCTCAAGCAACAAATTTCCACAAGACAAAAAACACTATGATAAACAAGCAACTAAAAGTCGTATTGGGAGCGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAACATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATCCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAGTAGTTTAAATCCAATTTGGAATGAAAGCTTAATGTTGTCAATTCCTGATCACATTCCACCTCTTAAAGTGCTTGTGTATGACAAAGATACTTTCTCAACGGATGATTTTATGGGCGAGGCTGAAATTGACATCCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGCGACAACACTCTTGTTAAAGATAGTATCATCTCCCTTGAAGAGGGGAAGGTCAAACAGGAGATCTCAGTGAGACTTCAACATGTTGAAAGAGGAGTGTTAGAGATTGAACTCGAATGTGTTCCTCTAACTCAATAGTTGAGATAGATGTTAAGGGTCAAAACTTAGCATAACACAATTTGGAGCATTATCACTATAGATGTCCTTTCTCTGCTCTCCTTTGTACAATATGTTGTGACTGTGACCATCCTTCTATAAATGAACAAAATATGAAATATCAAAAAGAGTTTAGGGGGAAAAAACTTATTGATTAATCAATTGTAAATGCTGGTGGTAAATTTATAAGTGAATTGGTTAAGATTAAAAGTTATTTAATATCATAT

>Glyma11g21515.3   sequence type=transcript   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATGCAGGCCTCAACCTTTAACATATATCCGTTAATCTGAAAATGTTATGAATTATATAGGCCATTGTTTGAGACAAACATGGCCCCTGAAGAATAAAAAGCAGAGAAGCAGCAAGAATTAGAGGTGGAAGAAGAAGCAAATGAAATAGCATGGGAAGAGAAGTAGAATATTATTTTGGTTAAGAGACTTCTAAGCTGCCCATGACTCATGCCCAATTTAAAATGAGAAAGGAAATAATTTGACATAGAGGTGATTGACAAACATATGGCTATTCTCAAATTGTAGCCTCAATTTTTTTGACTTGGTTTCAAATATTGGATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATGCCAATGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATAGTCAAGTTCTTAGAGATCGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGATAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATCAGACCCAAAATGGGTGTCTTCAAATAATGGAGTATTTATTTGCATCAAATGCTCTGGTGTACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAATTTGGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGAATATTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCCTCAAGCAACAAATTTCCACAAGACAAAAAACACTATGATAAACAAGCAACTAAAAGTCGTATTGGGAGCGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAACATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATCCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAGTAGTTTAAATCCAATTTGGAATGAAAGCTTAATGTTGTCAATTCCTGATCACATTCCACCTCTTAAAGTGCTTGTGTATGACAAAGATACTTTCTCAACGGATGATTTTATGGGCGAGGCTGAAATTGACATCCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGCGACAACACTCTTGTTAAAGATAGTATCATCTCCCTTGAAGAGGGGAAGGTCAAACAGGAGATCTCAGTGAGACTTCAACATGTTGAAAGAGGAGTGTTAGAGATTGAACTCGAATGTGTTCCTCTAACTCAATAGTTGAGATAGATGTTAAGGGTCAAAACTTAGCATAACACAATTTGGAGCATTATCACTATAGATGTCCTTTCTCTGCTCTCCTTTGTACAATATGTTGTGACTGTGACCATCCTTCTATAAATGAACAAAATATGAAATATCAAAAAGAGTTTAGGGGGAAAAAACTTATTGATTAATCAATTGTAAATGCTGGTGGTAAATTTATAAGTGAATTGGTTAAGATTAAAAGTTATTTAATATCATAT

Coding sequences of Glyma11g21515

Limit To All Plant Sequences

>Glyma11g21515.1   sequence type=CDS   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATGCCAATGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATAGTCAAGTTCTTAGAGATCGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGATAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATCAGACCCAAAATGGGTGTCTTCAAATAATGGAGTATTTATTTGCATCAAATGCTCTGGTGTACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAATTTGGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGAATATTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCCTCAAGCAACAAATTTCCACAAGACAAAAAACACTATGATAAACAAGCAACTAAAAGTCGTATTGGGAGCGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAACATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATCCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAGTAGTTTAAATCCAATTTGGAATGAAAGCTTAATGTTGTCAATTCCTGATCACATTCCACCTCTTAAAGTGCTTGTGTATGACAAAGATACTTTCTCAACGGATGATTTTATGGGCGAGGCTGAAATTGACATCCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGCGACAACACTCTTGTTAAAGATAGTATCATCTCCCTTGAAGAGGGGAAGGTCAAACAGGAGATCTCAGTGAGACTTCAACATGTTGAAAGAGGAGTGTTAGAGATTGAACTCGAATGTGTTCCTCTAACTCAATAG

>Glyma11g21515.2   sequence type=CDS   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATGCCAATGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATAGTCAAGTTCTTAGAGATCGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGATAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATCAGACCCAAAATGGGTGTCTTCAAATAATGGAGTATTTATTTGCATCAAATGCTCTGGTGTACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAATTTGGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGAATATTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCCTCAAGCAACAAATTTCCACAAGACAAAAAACACTATGATAAACAAGCAACTAAAAGTCGTATTGGGAGCGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAACATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATCCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAGTAGTTTAAATCCAATTTGGAATGAAAGCTTAATGTTGTCAATTCCTGATCACATTCCACCTCTTAAAGTGCTTGTGTATGACAAAGATACTTTCTCAACGGATGATTTTATGGGCGAGGCTGAAATTGACATCCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGCGACAACACTCTTGTTAAAGATAGTATCATCTCCCTTGAAGAGGGGAAGGTCAAACAGGAGATCTCAGTGAGACTTCAACATGTTGAAAGAGGAGTGTTAGAGATTGAACTCGAATGTGTTCCTCTAACTCAATAG

>Glyma11g21515.3   sequence type=CDS   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATGCCAATGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATAGTCAAGTTCTTAGAGATCGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGATAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATCAGACCCAAAATGGGTGTCTTCAAATAATGGAGTATTTATTTGCATCAAATGCTCTGGTGTACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAATTTGGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGAATATTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCCTCAAGCAACAAATTTCCACAAGACAAAAAACACTATGATAAACAAGCAACTAAAAGTCGTATTGGGAGCGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAACATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATCCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAGTAGTTTAAATCCAATTTGGAATGAAAGCTTAATGTTGTCAATTCCTGATCACATTCCACCTCTTAAAGTGCTTGTGTATGACAAAGATACTTTCTCAACGGATGATTTTATGGGCGAGGCTGAAATTGACATCCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGCGACAACACTCTTGTTAAAGATAGTATCATCTCCCTTGAAGAGGGGAAGGTCAAACAGGAGATCTCAGTGAGACTTCAACATGTTGAAAGAGGAGTGTTAGAGATTGAACTCGAATGTGTTCCTCTAACTCAATAG

Predicted protein sequences of Glyma11g21515

Limit To All Plant Sequences

>Glyma11g21515.1   sequence type=predicted peptide   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEMSVQHENSDANGVSGSGSCLYDLLCSETPSLNSQVLRDRWMSSGPQKRLDNLMRQAGNKYCADCGSSDPKWVSSNNGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDALVNLGGNTVINMKYEACLPSNIKKPKPNSSIEERYDFIRRKYEFLQFLNIEENLSCPFVPSHARSSSSNKFPQDKKHYDKQATKSRIGSAFRNSWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDVMSSDPYVIISLGHQSVKTRVIKSSLNPIWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDSIISLEEGKVKQEISVRLQHVERGVLEIELECVPLTQ*

>Glyma11g21515.2   sequence type=predicted peptide   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEMSVQHENSDANGVSGSGSCLYDLLCSETPSLNSQVLRDRWMSSGPQKRLDNLMRQAGNKYCADCGSSDPKWVSSNNGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDALVNLGGNTVINMKYEACLPSNIKKPKPNSSIEERYDFIRRKYEFLQFLNIEENLSCPFVPSHARSSSSNKFPQDKKHYDKQATKSRIGSAFRNSWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDVMSSDPYVIISLGHQSVKTRVIKSSLNPIWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDSIISLEEGKVKQEISVRLQHVERGVLEIELECVPLTQ*

>Glyma11g21515.3   sequence type=predicted peptide   gene model=Glyma11g21515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEMSVQHENSDANGVSGSGSCLYDLLCSETPSLNSQVLRDRWMSSGPQKRLDNLMRQAGNKYCADCGSSDPKWVSSNNGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDALVNLGGNTVINMKYEACLPSNIKKPKPNSSIEERYDFIRRKYEFLQFLNIEENLSCPFVPSHARSSSSNKFPQDKKHYDKQATKSRIGSAFRNSWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDVMSSDPYVIISLGHQSVKTRVIKSSLNPIWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDSIISLEEGKVKQEISVRLQHVERGVLEIELECVPLTQ*

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