SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61710 | AT | Annotation by Michelle Graham. TAIR10: AUTOPHAGY 6 | chr3:22839477-22842253 REVERSE LENGTH=517 | SoyBase | E_val: 0 | ISS |
| GO:0000045 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagic vacuole assembly | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0000407 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: pre-autophagosomal structure | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2751 | KOG | Beclin-like protein | JGI | ISS | |
| PTHR12768 | Panther | BECLIN 1-RELATED | JGI | ISS | |
| PTHR12768:SF3 | Panther | BECLIN 1-RELATED | JGI | ISS | |
| PF04111 | PFAM | Autophagy protein Apg6 | JGI | ISS | |
| UniRef100_I1LLC2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLC2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q4A189 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beclin 1 protein n=1 Tax=Glycine max RepID=Q4A189_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g21490 not represented in the dataset |
Glyma11g21490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g153900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g21490.1 sequence type=CDS gene model=Glyma11g21490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAGGGCGAAAATAAGGGCCGGACTCGGAGCTTCCCGGTGGATCCGAACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGGGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTAAAATGGACAATTCATATGTGGTGTTGCCCAAGCAGAGACCTCTGGCTCAGGGAAATGCTCCTCGGCCACGCGGTGATGCCGCTGCACAGCCTGGGAAGGCGATGGAGGAGTCATTTGTGGTTGTGTACAAGTCTGAATCGGGGATTGATGGAAACGGGGCGCATTTGTTGGGCACAGGGGCTGATTCTGGTGGCCATTTGCCGCCTCATAACTCTGGGTTTAATTCTACTATTACTGTCCTGACTCGAGCATTTGAGATTGCCACGACACAGACGCAGGTTGAACAGCCTTTGTGCCTTGACTGCATGAGGATTTTGTCAGATAAGCTTGATAAAGAGGTTGAAGATGTCAACAGGGACATTGAAGCATATGAAGCCTGTCTTAAACGCTTGGAAGGGGAGGCTAGAGATCTCCTCAGTGAGGCTGATTTTCTTAAAGAGAAATTGAAGATTGAGGAAGAAGAACGAAGACTTGAAGCAGTAATTGAAGAAACCGAGAGACAGAATGCTGAAGTAAATGCTGAACTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCGGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAGGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAAGCACATTTAGAATTATTGAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACATTGTTTTTAGCATGCCTCAAGGATTTTGCAGACTTTGCCAAATCCAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAGCAGGAAAATTGGACTAAATCTCTCAAGTACACTCTTTGCAATTTGAAATGGGCTCTCTATTGGTTTGTTGGAAATACTAACTTCCAGCCTCTTTCAGCAATGGTATCTTCGCATGCTGAAGTGCCGGCGGTTGGGCCTCTGTACACGAAGCGTGGTGTTGATGCCAAATCTGAATCTCGAAACTGA
>Glyma11g21490.1 sequence type=predicted peptide gene model=Glyma11g21490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKGENKGRTRSFPVDPNVPRWVCQNCRNPLCIVGADSYADKFFNDPSRSGMQGSSIHGASSVLSTTKMDNSYVVLPKQRPLAQGNAPRPRGDAAAQPGKAMEESFVVVYKSESGIDGNGAHLLGTGADSGGHLPPHNSGFNSTITVLTRAFEIATTQTQVEQPLCLDCMRILSDKLDKEVEDVNRDIEAYEACLKRLEGEARDLLSEADFLKEKLKIEEEERRLEAVIEETERQNAEVNAELRELELKSSRFNELEERYWHEFNNFQFQLISHQEERDAILAKIEVSQAHLELLKRTNVLNDAFPISHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFQYRIKIIPMGSYPRITDTNNSTYELFGPVNLFWSTRYDKAMTLFLACLKDFADFAKSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKSLKYTLCNLKWALYWFVGNTNFQPLSAMVSSHAEVPAVGPLYTKRGVDAKSESRN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
