Glyma11g20880 - SoyBase

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Report for Sequence Feature Glyma11g20880

Feature Type:	gene_model
Chromosome:	Gm11
Start:	17714458
stop:	17717939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g20880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13460	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 11 \| chr5:4316323-4318247 FORWARD LENGTH=443	SoyBase	E_val: 1.00E-96	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF198	Panther		JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7ZWB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZWB7_MEDTR	SoyBase	E_val: 5.00E-179	ISS
UniRef100_UPI000233D001	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D001 related cluster n=1 Tax=unknown RepID=UPI000233D001	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g20880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g20880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g149200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g20880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g20880

Limit To All Plant Sequences

>Glyma11g20880.1   sequence type=CDS   gene model=Glyma11g20880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGAAGGGTTGGTTTAGCATGTTTAAGAAGCTCTTTTTATGGAACACACATTCCTCACAAGAGAAGAAGGAGAAAAGAAGAAGGGCTTGGATATTTGGGAGGGTTAAGACCAAGAGATTGCCTTCAATTACAGCTCCACCACCACCACCTTCAAAAGAAACAAGACTAAGTGAGGCTGAGGAAGAACACAGCAAGCATGCTTTGACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATTACTGCAGCTCAGGTTGCTGTTGAGGTTGTTAGGCTCCAATCTGCTGCTCATCTACAACTTAAAGAAAAACAAGAACAACTTCAATTACAACCTGTTAAAACTAGCCATGATGCTCCTCAGAATACACACCAACGCCAGAGGAAGATTCAAGAATCTTCAGCCATCAAAATTCAAACAGCATATAGAGGTTACCTAGCAAGGAAAGCTTTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGAGTACTCTAAAGTGCTTAGAGTCAATAGTAAGTATCCAATCACAGGTCTTCGCAAGGAAATCCCAAATGGTTGAAGAAAGATGGGATTGTGGTGAACATGAAGAGATGCAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAACGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCCTCTTGCGTAAGCAAGAAAGAAGCAGTTCTTAAGAGAGAAAAAGTAAAAGAATACTCATTTAACCACAGAAGGTCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGATGGAGGTACTGGATGGAGCAGTGGGTAGACACACAACTTTCTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTATTCTAGACCTGGGGAGGAATGTGGAAGGAGACAACTAAAGCTTAGAAATTTTCAGAGACAAAACCAGATTGAAGCATTAGATTCTCCATCACTTTCTTCAAGGAACCAAACTTCAGGGGCAGAAGATCACTCAGTTCCAAGCTCTCCTGCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGATAGGAGGGAATTTTGACATCAACTCTGATAGCTATTCACCATGCAAGAATAAGTTACCTATTGTGACTTCTATTAATGGTGAAGTGCTTAGTAATGGTAGGATTGGCAAGCTCAGCAGTAATCAGCAAAGATCACCTAGCTTAAAGGGCCTTCCAAGACCTCTAAAATTAAGTCAAACATTGAGGGGTCTTAGCATTAATTCAGATTGCCCAGTGCCAATTTGA

Predicted protein sequences of Glyma11g20880

Limit To All Plant Sequences

>Glyma11g20880.1   sequence type=predicted peptide   gene model=Glyma11g20880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKKGWFSMFKKLFLWNTHSSQEKKEKRRRAWIFGRVKTKRLPSITAPPPPPSKETRLSEAEEEHSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAAHLQLKEKQEQLQLQPVKTSHDAPQNTHQRQRKIQESSAIKIQTAYRGYLARKALRALKGIVKLQAIIRGRAVRRQALSTLKCLESIVSIQSQVFARKSQMVEERWDCGEHEEMQGSRDKIIRMDSNSERTWDDSILLKEEVDASCVSKKEAVLKREKVKEYSFNHRRSAESERNKINGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHYSRPGEECGRRQLKLRNFQRQNQIEALDSPSLSSRNQTSGAEDHSVPSSPAIPTYMAATKSTQAKARSTSSPRARIGGNFDINSDSYSPCKNKLPIVTSINGEVLSNGRIGKLSSNQQRSPSLKGLPRPLKLSQTLRGLSINSDCPVPI*

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