SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79150 | AT | Annotation by Michelle Graham. TAIR10: binding | chr1:29772716-29777874 REVERSE LENGTH=830 | SoyBase | E_val: 1.00E-51 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0042991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR14428 | Panther | NUCLEOLAR COMPLEX PROTEIN 3 | JGI | ISS | |
| PTHR14428:SF5 | Panther | gb def: Hypothetical protein | JGI | ISS | |
| PF07540 | PFAM | Nucleolar complex-associated protein | JGI | ISS | |
| UniRef100_G7KTA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar complex protein-like protein n=1 Tax=Medicago truncatula RepID=G7KTA4_MEDTR | SoyBase | E_val: 2.00E-75 | ISS |
| UniRef100_I1LQY1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQY1_SOYBN | SoyBase | E_val: 5.00E-109 | ISS |
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Glyma11g20830 not represented in the dataset |
Glyma11g20830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g07470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g20830.1 sequence type=CDS gene model=Glyma11g20830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAAGAAGAAGGATAAAATCATTCTTCCACCGGAGCTTCCGCTGGAAATTCCCGACGACGAAGTTGAAGTTTCTGATGATGACCTCCAATTCATCAAGGAGAACTGTGCCTATGCCTCCCTTGTTTCCACCTTGGACACCCATTCAATCACCAAGTTCGCTTCTTCACTATTTTATAGTGTCACTCCTTACTTGCAATGCTATATTCTGCGTAAACTGTTAGCTAAAAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAAATCCATTACGGGACAGCTACAAAGACAGTATTGGAAAATGATCCAAGTGAAGAGGGAACTGGAGAGGATGTCAATAAGGACAAAGGTATGGTCAAGCTAACTAAGGCTGAAAAGAGAGCCAAGCTTAAGAAAATGAGAAAAGAGGCGAAACAACAAGGGAAAGAGGTGGCTAAAGCAGAAGTGGAAGAGACACCACAAGCAGCAGTACTGGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAGTTGGGGAATGCCTTGCTTACAGATCCAGACTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAAATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAGTCATCTCTTCTTTCTGCATACAAGTGTTAA
>Glyma11g20830.1 sequence type=predicted peptide gene model=Glyma11g20830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKKKDKIILPPELPLEIPDDEVEVSDDDLQFIKENCAYASLVSTLDTHSITKFASSLFYSVTPYLQCYILRKLLAKNALKKEKEETGLQVDRVDALPIKTLDGKIHYGTATKTVLENDPSEEGTGEDVNKDKGMVKLTKAEKRAKLKKMRKEAKQQGKEVAKAEVEETPQAAVLAEVKEDLTAEEAFESKKHKLAELGNALLTDPDYRIRLPTEKELEMKVSKTVRKMRYYESSLLSAYKC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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