Glyma11g20530 - SoyBase

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Report for Sequence Feature Glyma11g20530

Feature Type:	gene_model
Chromosome:	Gm11
Start:	17353708
stop:	17357790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g20530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28380	AT	Annotation by Michelle Graham. TAIR10: dsRNA-binding protein 2 \| chr2:12134098-12135915 REVERSE LENGTH=434	SoyBase	E_val: 4.00E-168	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0070919	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR11207	Panther	RIBONUCLEASE III	JGI		ISS
PF00035	PFAM	Double-stranded RNA binding motif	JGI		ISS
UniRef100_G7IRT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease n=1 Tax=Medicago truncatula RepID=G7IRT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D769	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D769 related cluster n=1 Tax=unknown RepID=UPI000189D769	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g20530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g20530

Paralog	Evidence	Comments
Glyma12g08070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g20530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g145900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g20530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g20530

Limit To All Plant Sequences

>Glyma11g20530.1   sequence type=CDS   gene model=Glyma11g20530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTGAACTTTAACGGCGAGATCTTCGAGAGTCCTCACTACTGTTCAACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCTCTCAATTCCCTCTCCAATCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTCTTGCAGGAAATTGCACAGAGGGTAGGGGCGCCGTTGCCCCAGTATTTTACATTCAGGTCAGGGTTAGGACATTTACCTGTTTTTACTGGCACAGTAGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCGGAGAAAAATGCAGCTATGGCAGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTGCTGAACTACAGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCAGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCTCCACCTGCCACCACATCAAAGATTCTTCCTTTAATTTGCCAAAAGGGAGCTCATCGAAGCAGGCATCTAGTAGCAGCATCTCCGGCACCAGCTTCCAGCGACAATTCTGTGATGCCACAACTTCCAGCTACACCAGATAGCCGAGGAATCCGTCGCCCTAAGTTCCCTGCAGCCGGAGCAGCACCTTATGTTCCCATTAGACAAATGAGGCCTTGTCAGGGGATGGCACCTCCAGTGACGATAAGGACTGCAATACCTGTATTCTCCCCACCACCACCGCCAGCAGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCATGTACGAGTTGCTCCTCCGGTCACTATTCGGCAAGCTGTTCCGGTATTTGCTGCTCCACCTCCACCAGTCCGAAAAGATGAACCTGTTCCCATCCCAAAAGACGAACCTGTCGCCGTCCCTAAAGACGACTCACCAACCATTAGTGCCCCTAGCTTGGAAGACAAACTGCCAACTAAAACTCCCGAGACAGAGACCAAGACTGAGAACATTCCACCTGAACCTGAGACAGTGCAGAGCTTGGAGCAGCTGAAAATCTGA

Predicted protein sequences of Glyma11g20530

Limit To All Plant Sequences

>Glyma11g20530.1   sequence type=predicted peptide   gene model=Glyma11g20530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRHLVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPKDEPVAVPKDDSPTISAPSLEDKLPTKTPETETKTENIPPEPETVQSLEQLKI*

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