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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma11g20370

Feature Type:gene_model
Chromosome:Gm11
Start:17193586
stop:17194482
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g20370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60710AT Annotation by Michelle Graham. TAIR10: Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704 SoyBaseE_val: 2.00E-12ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009690GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
UniRef100_Q9FF49UniRef Annotation by Michelle Graham. Most informative UniRef hit: C3H4 type zinc finger protein n=1 Tax=Arabidopsis thaliana RepID=Q9FF49_ARATH SoyBaseE_val: 8.00E-10ISS
UniRef100_UPI000233C53EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C53E related cluster n=1 Tax=unknown RepID=UPI000233C53E SoyBaseE_val: 4.00E-42ISS

Expression Patterns of Glyma11g20370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g20370 not represented in the dataset
Glyma11g20370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g20370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g144700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g20370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g20370
>Glyma11g20370.1   sequence type=CDS   gene model=Glyma11g20370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCAAATGGACAAAATTGAAGCTGGCTCTTGGTTTGGATTCCTGTGTACACATTCCTAGATCCTTTGATAATTCCTCCTCCGCCGCAACAAGGTTTTCCGGCGGCGTCTCACCCACCGTCGTTTCGCCGGCCGGCGACTCCTCCAGTTATCGCCCCTCCACTCCGACACCATCGTCTTCTGGCCTCCGGTTACCCAAATCCGGACCCAAATCCCCTAAGATGAACAACAACTTCAGCTTTAATCATACTTTAATATTCTTAATTGGGGCATGGTGGTGGATTGCTTGGCTCATTACAAATGGTTTTCCATTTTACACCGTTCTTCTTGTTTCGTCCATTTACTCAATTTTACTGGGGACTATTCAATTCAGTGGACACATTTCTTTTGATTTATCTCTCTCCTTTCCCTTCCTTCTTTATCCCCACATGAGACCCCATAACCGTTGA
Predicted protein sequences of Glyma11g20370
>Glyma11g20370.1   sequence type=predicted peptide   gene model=Glyma11g20370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKWTKLKLALGLDSCVHIPRSFDNSSSAATRFSGGVSPTVVSPAGDSSSYRPSTPTPSSSGLRLPKSGPKSPKMNNNFSFNHTLIFLIGAWWWIAWLITNGFPFYTVLLVSSIYSILLGTIQFSGHISFDLSLSFPFLLYPHMRPHNR*






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