Glyma11g20020 - SoyBase

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Report for Sequence Feature Glyma11g20020

Feature Type:	gene_model
Chromosome:	Gm11
Start:	16819001
stop:	16825122
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g20020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05160	AT	Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein \| chr4:2664451-2666547 FORWARD LENGTH=544	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004321	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA synthase activity	SoyBase	N/A	ISS
GO:0016207	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity	SoyBase	N/A	ISS
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24096:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_H2BER4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate:CoA ligase n=2 Tax=Glycine max RepID=H2BER4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LL15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LL15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g20020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g20020

Paralog	Evidence	Comments
Glyma12g08460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g20020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g194500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g20020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g20020

Limit To All Plant Sequences

>Glyma11g20020.2   sequence type=transcript   gene model=Glyma11g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTACTTATTTTCTATTTTCATCCATCTTATTTGTCTCCTCTACACCAAAACCCTGAGTTTCCAAAGTTACATGAGGTCTGCTGTTTATTATTTTAACCTTGAAAAAGTCATATATCACCATCATCTTAGTTGTGAATTGTGATCCAATTTAAATGCAAGAACAAGGCATATTGTCGACAATTAATGTCTGGCTATCATCTTATCCACGACTATGGGTGTCAATAAACAAACCAGGTGAATTTCCAAATTGCCAAATTCATTCAGAACCCAAAATCCCTTGATTTCCTTCCTTCACCGCACCCACTTATATCTCTTAAATTAGTTTTCCAATGCAGAAAGCAGGGTACGGTGGCGATGGAATATACAGGTCTCTAAGGCCTTGTTTGGTTCTCCCAAATGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCTTTCCCATCCAAAATCGCCCTCGTCGATTCCCACTCTTCCCAAACACTTACCTTGGCGCACCTCAAATCACAGGTCGCCAAACTTGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCGTCCTACTGCTCGCTCCCAACAGCATCCACTACCCTATATGCTTCCTCGCTGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAATCCCATTTACACAGTCAACGAAATCTCGAAGCAAGTCGACGACTCCAACCCCAAACTCCTCATCACCGTCCCAGAATTATGGGACAAAGTCAAGAACCTCAACCTCCCCGCCGTAATTATCGATACGGAAACAGCTCAAGGACTCGTGAGTTTCGAAGCTGGCAACGAGGTGTCGAGAATAACGAGTCTTGACGCGGTGATGGAGATGGCTGGACCGGCGACGGAGCTGCCGGAGAGCGGCGTGAAGCAGGGGGACACGGCGGCGCTTCTGTACTCCTCGGGAACGACGGGGTTGAGCAAGGGCGTGGTTCTGACGCACCGGAACTTCATAGCGGCGTCGGTGATGATCGGAATGGACGACGACCTCGCCGGGGAGCAAGACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGTGTTCGGGCTGGCGGTGGTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGGTGATGGAGAGGTTCGAGCTGGAGGCGCTGCTGAAGGCTATTGAGAAGCAGAGGGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGGTCTGGCGAAACAGAGCGTGGTTGGAAACTACGATCTTTCCTCGTTGAGGCGTATAGGTTCGGGTGCTGCTCCTCTCGGGAAAGACTTGATGGAAGAGTGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGCTATCACAACAATCCAGAGGCCACGAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTAACATTCATCAACAATGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAATATATTACATTCTTTTTGGACAAACAATTTCTGAGATATATTGAAAATTAGGAGTGCGCGCATCAGTGCATCCTGCAAGATTAATCTATATACCCAATCAAGTTTAAAATTAAAACCATGCAATAATCCCTCCATAGTCCAGATTATACTAGCATTCCTTTGCATCTGGTGTTTGTGAACTAAATTTTCTTCTTTTGAAGTTAGAAAAAATGTTAAAATAAGAAACAAAAATTTTACAAGTTAAATTTCCATATATACACTATAGTGTATCATAGTAGTATGATTTTTGAGATGATTGTTGTAATAGCCAACAAACTTAATATTTATATCAAGTTATGATTGAGTGATAATATATTTTTTTTTTTTTACATTATAAGAGCATGTACTATTTTTTTCAA

Coding sequences of Glyma11g20020

Limit To All Plant Sequences

>Glyma11g20020.1   sequence type=CDS   gene model=Glyma11g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAGCAGGGTACGGTGGCGATGGAATATACAGGTCTCTAAGGCCTTGTTTGGTTCTCCCAAATGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCTTTCCCATCCAAAATCGCCCTCGTCGATTCCCACTCTTCCCAAACACTTACCTTGGCGCACCTCAAATCACAGGTCGCCAAACTTGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCGTCCTACTGCTCGCTCCCAACAGCATCCACTACCCTATATGCTTCCTCGCTGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAATCCCATTTACACAGTCAACGAAATCTCGAAGCAAGTCGACGACTCCAACCCCAAACTCCTCATCACCGTCCCAGAATTATGGGACAAAGTCAAGAACCTCAACCTCCCCGCCGTAATTATCGATACGGAAACAGCTCAAGGTTCTCACTTATTTTTCGCTCGGTCCAGACTCGTGAGTTTCGAAGCTGGCAACGAGGTGTCGAGAATAACGAGTCTTGACGCGGTGATGGAGATGGCTGGACCGGCGACGGAGCTGCCGGAGAGCGGCGTGAAGCAGGGGGACACGGCGGCGCTTCTGTACTCCTCGGGAACGACGGGGTTGAGCAAGGGCGTGGTTCTGACGCACCGGAACTTCATAGCGGCGTCGGTGATGATCGGAATGGACGACGACCTCGCCGGGGAGCAAGACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGTGTTCGGGCTGGCGGTGGTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGGTGATGGAGAGGTTCGAGCTGGAGGCGCTGCTGAAGGCTATTGAGAAGCAGAGGGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGGTCTGGCGAAACAGAGCGTGGTTGGAAACTACGATCTTTCCTCGTTGAGGCGTATAGGTTCGGGTGCTGCTCCTCTCGGGAAAGACTTGATGGAAGAGTGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGCTATCACAACAATCCAGAGGCCACGAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTAACATTCATCAACAATGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA

>Glyma11g20020.2   sequence type=CDS   gene model=Glyma11g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAGCAGGGTACGGTGGCGATGGAATATACAGGTCTCTAAGGCCTTGTTTGGTTCTCCCAAATGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCTTTCCCATCCAAAATCGCCCTCGTCGATTCCCACTCTTCCCAAACACTTACCTTGGCGCACCTCAAATCACAGGTCGCCAAACTTGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCGTCCTACTGCTCGCTCCCAACAGCATCCACTACCCTATATGCTTCCTCGCTGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAATCCCATTTACACAGTCAACGAAATCTCGAAGCAAGTCGACGACTCCAACCCCAAACTCCTCATCACCGTCCCAGAATTATGGGACAAAGTCAAGAACCTCAACCTCCCCGCCGTAATTATCGATACGGAAACAGCTCAAGGACTCGTGAGTTTCGAAGCTGGCAACGAGGTGTCGAGAATAACGAGTCTTGACGCGGTGATGGAGATGGCTGGACCGGCGACGGAGCTGCCGGAGAGCGGCGTGAAGCAGGGGGACACGGCGGCGCTTCTGTACTCCTCGGGAACGACGGGGTTGAGCAAGGGCGTGGTTCTGACGCACCGGAACTTCATAGCGGCGTCGGTGATGATCGGAATGGACGACGACCTCGCCGGGGAGCAAGACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGTGTTCGGGCTGGCGGTGGTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGGTGATGGAGAGGTTCGAGCTGGAGGCGCTGCTGAAGGCTATTGAGAAGCAGAGGGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGGTCTGGCGAAACAGAGCGTGGTTGGAAACTACGATCTTTCCTCGTTGAGGCGTATAGGTTCGGGTGCTGCTCCTCTCGGGAAAGACTTGATGGAAGAGTGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGCTATCACAACAATCCAGAGGCCACGAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTAACATTCATCAACAATGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA

Predicted protein sequences of Glyma11g20020

Limit To All Plant Sequences

>Glyma11g20020.1   sequence type=predicted peptide   gene model=Glyma11g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKAGYGGDGIYRSLRPCLVLPNDPNLSLVSFLFQSVSSFPSKIALVDSHSSQTLTLAHLKSQVAKLAHGFLKLGINKNDVVLLLAPNSIHYPICFLAATAIGAVVSTANPIYTVNEISKQVDDSNPKLLITVPELWDKVKNLNLPAVIIDTETAQGSHLFFARSRLVSFEAGNEVSRITSLDAVMEMAGPATELPESGVKQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQRVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLRRVTFINNVPKTASGKILRRELTAKARSKI*

>Glyma11g20020.2   sequence type=predicted peptide   gene model=Glyma11g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKAGYGGDGIYRSLRPCLVLPNDPNLSLVSFLFQSVSSFPSKIALVDSHSSQTLTLAHLKSQVAKLAHGFLKLGINKNDVVLLLAPNSIHYPICFLAATAIGAVVSTANPIYTVNEISKQVDDSNPKLLITVPELWDKVKNLNLPAVIIDTETAQGLVSFEAGNEVSRITSLDAVMEMAGPATELPESGVKQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQRVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLRRVTFINNVPKTASGKILRRELTAKARSKI*

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