Glyma11g19810 - SoyBase

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Report for Sequence Feature Glyma11g19810

Feature Type:	gene_model
Chromosome:	Gm11
Start:	16586293
stop:	16588300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22890	AT	Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein \| chr5:7653541-7654662 REVERSE LENGTH=373	SoyBase	E_val: 6.00E-100	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11389	Panther	ZINC FINGER PROTEIN	JGI		ISS
PF00096	PFAM	Zinc finger, C2H2 type	JGI		ISS
UniRef100_I1LKY9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKY9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0WT24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2H2 and C2HC zinc finger-containing protein n=2 Tax=Arabidopsis thaliana RepID=Q0WT24_ARATH	SoyBase	E_val: 3.00E-97	ISS

Expression Patterns of Glyma11g19810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19810

Paralog	Evidence	Comments
Glyma12g08680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g192400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g19810

Limit To All Plant Sequences

>Glyma11g19810.1   sequence type=CDS   gene model=Glyma11g19810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCAAAGGCCACAATATCTACTACCCCCACAAATGATTTTCAAGAACTGCATATGTTTCCTGCAGCAGTGAATAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCATCACCTTCACACTCATCTTCAAACTCTCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTAGGTCAACTCCACAACCTAGTTGGTGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACCATCAATAACACAATCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGCCAGCAAATGATTTCTAGTTCCCCTTCAGGTACTAATACTATTAATGAATTGCACCAGCAACAAATTGATCATGGTAGATTATTACCACCATCACATCATGAATCAAACTTTATCAACAACAATAGGGGTGTGCCTAGTAACATTAACATAGTCTCACATATAAATAGAGGGCAAAGTTTCTTATCTAATAGTATTGAGGGAGAGGCATCATTGGATTGGTTTGCTGAAAGCTACAATAATAGCAATAGTGGTAATAATTATTTTAACCCTAAGGATGATGAAGCAGCCAACATTATTAACAACATCATGGGGGAGACGAGTGATGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGATGCTAATTTGAGGATGCACATGAGGGCACATGGGGAAGAGTACAAAACAAGTGCAGCTTTGCGCAACCCAATGAAGAAAAACAACAAAAAGGAGAGTAATTTGTTGTTTTTAGGTGCAGAAGGAAGTGTGACAAAGAGATATTCGTGCCCTCAACAAGGGTGTAGATGGAACCAAAGGCATGCCAAGTTCCAACCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTATATGTGCAATAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACTATCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAGGACAAGCTTATGGGCCATATTACTTTGTTCGCGGGGCACACCCCAGTTCCTAATATTAATGGCATGTCATCATACATGGGAAAATCAGAAGTACAACAGAATAATATTGCTGGTGGTTTAAGATGA

Predicted protein sequences of Glyma11g19810

Limit To All Plant Sequences

>Glyma11g19810.1   sequence type=predicted peptide   gene model=Glyma11g19810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPKATISTTPTNDFQELHMFPAAVNNEYLVSPSLEASSSSSPSHSSSNSLLFYLSLLKDKLGQLHNLVGVLVSPQQNLPESTPTAISTINNTIQEIIVAATSMRFTCQQMISSSPSGTNTINELHQQQIDHGRLLPPSHHESNFINNNRGVPSNINIVSHINRGQSFLSNSIEGEASLDWFAESYNNSNSGNNYFNPKDDEAANIINNIMGETSDDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRNPMKKNNKKESNLLFLGAEGSVTKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYMCNRCNQKQFSVLSDLRTHEKHCGDYPKWQCSCGTTFSRKDKLMGHITLFAGHTPVPNINGMSSYMGKSEVQQNNIAGGLR*

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