SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27970 | AT | Annotation by Michelle Graham. TAIR10: CDK-subunit 2 | chr2:11912460-11913112 REVERSE LENGTH=83 | SoyBase | E_val: 1.00E-50 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0001708 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell fate specification | SoyBase | N/A | ISS |
| GO:0007049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016538 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity | SoyBase | N/A | ISS |
| KOG3484 | KOG | Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins | JGI | ISS | |
| PTHR23415 | Panther | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT OR 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7-RELATED | JGI | ISS | |
| PTHR23415:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01111 | PFAM | Cyclin-dependent kinase regulatory subunit | JGI | ISS | |
| UniRef100_A9PE37 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulatory subunit of cyclin-dependent kinase n=1 Tax=Populus trichocarpa RepID=A9PE37_POPTR | SoyBase | E_val: 2.00E-51 | ISS |
| UniRef100_I3SFB5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Papilionoideae RepID=I3SFB5_LOTJA | SoyBase | E_val: 4.00E-58 | ISS |
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Glyma11g19780 not represented in the dataset |
Glyma11g19780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g08760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g192100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g19780.2 sequence type=transcript gene model=Glyma11g19780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGATTTCATCCTTCCTATTCCGAATTCCAGAGAGCAATATATTCGTTCCGTTCCTTCTTTCTCCGCTCCTCACTTCGCTCTCTCATTCTCCATTCTCACTTCTCAAATTGAATCGAACGAATTCACAAACCCTAGTTTTCGAGGATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTACGAATATAGACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAAAATGAGTGGCGGGCAATTGGGGTTCAGCAGAGCCGTGGCTGGGTTCATTATGCAATTCATCGCCCTGAGCCACACATAATGCTCTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAGGCCCAGCAAAGCATGCTTGTCAAATGAACACTATCTATGCAAATCTGAAAGTGGGATTACAATGTTATATAGGTTTTAATTTTGTTGGTAATATGGATGTTATGAAGAATGAAGAACCCTGGTGGAATTCTCTTTTTGTGGAGAATTTTCATGTGGTTTCAACTGTCATTTTAATGTGTTGTTGACATGATGATGTGTCATGGATTTTTATTGGTGTACCTCTCGTGTACTCTTATGCTCGGTGGATTATATAATAGTCATTATCGGTTAAATTCTTCTATGATTCCATGACTCAGGCGTGTGTTTTCTAGTGATCACAGTTTTTCACAGCGACGATTGTAATTTTTCTTGAAGCAATGTTCGATTTCAGTTATTATATTAGGTTTAAAAT
>Glyma11g19780.1 sequence type=CDS gene model=Glyma11g19780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTACGAATATAGACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAAAATGAGTGGCGGGCAATTGGGGTTCAGCAGAGCCGTGGCTGGGTTCATTATGCAATTCATCGCCCTGAGCCACACATAATGCTCTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAGGCCCAGCAAAGCATGCTTGTCAAATGA >Glyma11g19780.2 sequence type=CDS gene model=Glyma11g19780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTACGAATATAGACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAAAATGAGTGGCGGGCAATTGGGGTTCAGCAGAGCCGTGGCTGGGTTCATTATGCAATTCATCGCCCTGAGCCACACATAATGCTCTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAGGCCCAGCAAAGCATGCTTGTCAAATGA
>Glyma11g19780.1 sequence type=predicted peptide gene model=Glyma11g19780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK* >Glyma11g19780.2 sequence type=predicted peptide gene model=Glyma11g19780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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