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Report for Sequence Feature Glyma11g19720

Feature Type:gene_model
Chromosome:Gm11
Start:16506689
stop:16507366
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08170AT Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=243 SoyBaseE_val: 2.00E-37ISS
GO:0006334GO-bp Annotation by Michelle Graham. GO Biological Process: nucleosome assembly SoyBaseN/AISS
GO:0000786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG1744 KOG Histone H2B JGI ISS
PTHR23428Panther HISTONE H2B JGI ISS
PTHR23428:SF2Panther CAMP RESPONSE ELEMENT-BINDING PROTEIN JGI ISS
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI ISS
UniRef100_B8MNS3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone H2B n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MNS3_TALSN SoyBaseE_val: 3.00E-35ISS
UniRef100_I1LKY2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKY2_SOYBN SoyBaseE_val: 6.00E-128ISS

Expression Patterns of Glyma11g19720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19720
ParalogEvidenceComments
Glyma12g08800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g191600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g19720
>Glyma11g19720.1   sequence type=CDS   gene model=Glyma11g19720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAAAACGTGCTGAGAAGTTGGTGGTGAGATCCACCAAGAAAGTTGTGGAATCAATTGTGCAAGTTTCTGTTGTAGGCAAAAGACTAACCCAAGTGATTCCTCAAGCACAGAAGGTTTCACCTAATTCTGACATCACCACTGAAAACAAAGCTGAGCAAGAGAATAATACTCATCAAGATGGTGGAGTCCAAAATCAAGAGGAAGAGCAAAAGGGAGTAGTGAATGAGGAAGCCAAAGAGGAGAAGAATAAGAGTAAGACCGCAAAAGAGCAAAATGGAAAGGAGAAAAAAAGAGGGAGAAAAAAGAGAAATATTGAAGGGTACCAGAGGTATGTGTATGGGGTGTTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCCAAGTGCATGACTGCTCTGAACAACTTGATGAATGACATGTTTGAGAGGCTGACTTTTGAGGTTTCTAAGCTGACGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATTCAAGGAGTAGTGAGGCTGGTTCTCCCAGGAGAGCTTGAAAAGCATGCTATTGCTGAAGGGGTCAAAGCTGTTAACAACTACACATCCTATGATGCATGA
Predicted protein sequences of Glyma11g19720
>Glyma11g19720.1   sequence type=predicted peptide   gene model=Glyma11g19720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKRAEKLVVRSTKKVVESIVQVSVVGKRLTQVIPQAQKVSPNSDITTENKAEQENNTHQDGGVQNQEEEQKGVVNEEAKEEKNKSKTAKEQNGKEKKRGRKKRNIEGYQRYVYGVLKQVHPEMGISSKCMTALNNLMNDMFERLTFEVSKLTDYTGHMTLSSREIQGVVRLVLPGELEKHAIAEGVKAVNNYTSYDA*






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