SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27900 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2939 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13258 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF10474 | PFAM | Protein of unknown function C-terminus (DUF2451) | JGI | ISS | |
| PF10475 | PFAM | Protein of unknown function N-terminal domain (DUF2450) | JGI | ISS | |
| UniRef100_B9DFD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT2G27900 protein n=2 Tax=Arabidopsis thaliana RepID=B9DFD2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C3C6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C3C6 related cluster n=1 Tax=unknown RepID=UPI000233C3C6 | SoyBase | E_val: 0 | ISS |
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Glyma11g19670 not represented in the dataset |
Glyma11g19670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g08830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g191100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g19670.1 sequence type=CDS gene model=Glyma11g19670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCCGAATTTGTTTCCCTTTGGAAGCGTGCTGGGGAATCCTTTCATTTTCAATGGCGACGGCGATTTGAGCGAGGGAGGAGGAGGGATCGAGAGCTCTAGGGTTTTCTTCTTGCTCCCGTTCTTCTTGCTCTCCCAGGGAGGAGCAATGGATTTGTCCAAGGTCGGCGAAAAAATCTTGAGTTCCGTTAGGTCCGCCAGATCTCTTGGATTGCTCCCTCCCGTTTCTGATCGCCCCGAGGTTCCAGCTCGAGCTGCTGCTGCAGCGGCTGTAGCTCGTGCTCTTGCAGGGTTACCTCCTCATCAGAGATACAGTCTTTCATCAAGTTCAGAAGAACTAAGTTCAATATATGGAAGCAGACCTCAAGGCCAAGTAGTGGAGGAGCTGGAGGATGAATTCTATGAAGAGGACTTTGATCCAATTAGGCATGTTTTAGAGCACGTTCCAGTTGAAGAGAACGAGCTAACATATTTTGAAAAACAGGCTGCCCTTAGATTGGCACAACTAGATAGAGTAGCCGAGCGTTTATCTCGCCATGTTATGGAGCATCATGAAGTGATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAAAAAGACTTAAGAATTGCAAATGTCATCTGTATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTTTCAAGAGATCTGATTGTGAATTCTTATTCTAAAAAGAAACAAGCTCTTCTGGACATGCTTCCAACCTTGACTGAACTTCGACGTGCATTGGACATGCCATCAACACTTGAATCCCTTGTAGAAGAAGGGAATTACTGGAAGGCATTTCAAGTCCTATCTGAGTATTTGCAAATCTTAGATAGTTTGTCAGAGCTTTCAGCAATACAAGAAATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTACAGAAGCTGGATGCTCTTTTATTGGGAGTATGCCAAGAATTCAAGGAAGATGGCTATATAACAGTAATTGATGCATATGCATTAATAGGGGATACTGCCGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACACACTCTGTATTAAAGGCTATTGTGCATGAGGATGAGGAGGGACTTTCGCAAAATAGTAGGCTTACTTACAGCGACTTATGCCTTCGAATACCTGATTCAAAGTTCAGGCAATGCTTATTACGAACATTGGCTGTTTTGTTTGACCTTATGTGTTCATACCATGAAATTATGGAATTCCAGCTAGAAAGAAAGGACTCAGCAGCACAAACTTCAAATAAGTGCAATGAAGAGATTTCCTGTAGTCCAGGTGAGACTCAGGAAGTTGATTCAGATGTAAGAGCCTGCAATAATTCTATGTCCAGTTCCAGAGATGTAATACATGGCTCATCTTCTAGGGAGGAATCTGCAACAAAGAGCTCACTGACTGAAACCAGTGGTTCACCATATAGTGATTTTCATGATACAATTAAGGAGGCTGGAAAGGAGGACAGTGCAACATCAAGCATTGAGTCCCCTTGGTACCATCTTCGCAAAGAAGCTACAACATTTGTTTCACAGACCCTTCAAAGAGGACGCAGGAATCTGTGGCATCTCACTGCAAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCAGTCTGTACTGCTAGCATTCATCAATTCTTGAAAAATTATGAAGACCTCGGTGTCTTTATTTTGACTGGGGAAGCCTTTTGTGGAATTGAAGCAGTTGAATTTAGGCAGAAGTTAAAGGTTGTTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATGTGCATGCACTAAAAATGGTTTTGGAGAAAGAGACTTGGCTAAAATTACCCCCAGAAACAGTACATATGATCAGTTTTGCAGGACTTATTGGTGATGGAGCACCGTTGATTTCTTTATCCAGTGGTAAATCAACTAATGTCAGTGCAGTCCATTCCATTAAATCGGTGAATATGGTTCACACTGGTGCAAGGAAGAATGGGTTTTCTCACTGGATTAAAAGTGGAAACCCTTTCCAGCAAAAATTACCAACCTCCAATGAAGGTCGTGGTTACTCGCAACCTAATGGATCAGTTTGTGGTGAATTTGACGGAAGTTCAACCAATAATTTTCATGACGATAAAACACCCAGAAAGAATGATATCAATCAAATGAATGGTGCCAATTCTGTTTCAGAAGATGAAAATGAGGATCTTCTTGCTGACTTTATTGATGAAGATAGTCAACTACCAAGTCGAAGTTCTAAACCCCATCATTCAAGAGCTCTCTCTTCACATGTTAATGACGAAGAGAATACAACACAAACTGGATCTTCTCTCTGTCTATTAAAGTCTATGGATAAATATGCAAGGCTTATGCAGAAATTGGAAGTGGTAAATGTTGAGTTCTTCAAGGGAGTATGCCAATTGTTTGGATTTTTTTTCTATTTTATATATGAAACATTTGGTCAGCAAAACGCTAGTTCAACTGGAAAAGGCACTTCTAGCTCTCTTAACTATCGCCTGAGAACAGCTTTATCCAGAGTAAACCAAGATTGTGAAGAGTGGATTAAGTCTCAATCATCGTCACCAACATCTTTGAGTTCACCATTTGTACATGCTGAGTTGACACCTACACACCCTCCCAATACAAATTATGGTCACTCCTCAGGGACTTCTTTGGGTCTGAAGGAAAGATGTGTGGCTGTTGACACTATATCTCTTGTTGCTCGAATACTGAATAGATCTAAAGCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTATACTTGAGGATTTCTATGTTCATCTGGTGGATGCTGTACCAGATCTTACAGAACATGTTCATCGGACTACAGTGAGACTACTGTTGCACATTAATGGATATGTTGAACGTGTTGCCAATTGTAAATGGGAAGTAAAAGAGCTTGGCATGGAGCATAATGGATATGTTGATTTGATGCTGGGGGAGTTTAAGCACTATAAAACACGACTTGCTCATGGAGGAATTCGTAAAGAGGTTCAAGACCTATTATTGGATTATGGGCTTGAAATTGTGGCGGAAACTCTTGTTGAAGGACTTTCACGGGTGAAGAGATGTAGTGATGAAGGACGGGCCCTTATGTCATTAGATCTGCAGGTTTTGATCAATGGGTTACACCATTTTGTGTCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAGACTTTCATCAAGGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCGGAATACAGTAAAAGCCAGGTTGTTGGACTGGTCAACCTTGTTGCCACTATGAAAGGTTGGAAGAGGAAAACCAGGTTGGACATACTAGAAAAGATTGAATGA
>Glyma11g19670.1 sequence type=predicted peptide gene model=Glyma11g19670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQPNLFPFGSVLGNPFIFNGDGDLSEGGGGIESSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPPVSDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPQGQVVEELEDEFYEEDFDPIRHVLEHVPVEENELTYFEKQAALRLAQLDRVAERLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALLDMLPTLTELRRALDMPSTLESLVEEGNYWKAFQVLSEYLQILDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTAGLAEKIQSFFMQEVISETHSVLKAIVHEDEEGLSQNSRLTYSDLCLRIPDSKFRQCLLRTLAVLFDLMCSYHEIMEFQLERKDSAAQTSNKCNEEISCSPGETQEVDSDVRACNNSMSSSRDVIHGSSSREESATKSSLTETSGSPYSDFHDTIKEAGKEDSATSSIESPWYHLRKEATTFVSQTLQRGRRNLWHLTASRVSVLLSSAAVCTASIHQFLKNYEDLGVFILTGEAFCGIEAVEFRQKLKVVCENYFIAFHRQNVHALKMVLEKETWLKLPPETVHMISFAGLIGDGAPLISLSSGKSTNVSAVHSIKSVNMVHTGARKNGFSHWIKSGNPFQQKLPTSNEGRGYSQPNGSVCGEFDGSSTNNFHDDKTPRKNDINQMNGANSVSEDENEDLLADFIDEDSQLPSRSSKPHHSRALSSHVNDEENTTQTGSSLCLLKSMDKYARLMQKLEVVNVEFFKGVCQLFGFFFYFIYETFGQQNASSTGKGTSSSLNYRLRTALSRVNQDCEEWIKSQSSSPTSLSSPFVHAELTPTHPPNTNYGHSSGTSLGLKERCVAVDTISLVARILNRSKAHLQSMLLQSNSTILEDFYVHLVDAVPDLTEHVHRTTVRLLLHINGYVERVANCKWEVKELGMEHNGYVDLMLGEFKHYKTRLAHGGIRKEVQDLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLHHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVVGLVNLVATMKGWKRKTRLDILEKIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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