Glyma11g19600 - SoyBase

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Report for Sequence Feature Glyma11g19600

Feature Type:	gene_model
Chromosome:	Gm11
Start:	16354934
stop:	16358637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22810	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:7621568-7623367 FORWARD LENGTH=337	SoyBase	E_val: 6.00E-170	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_B9SN62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SN62_RICCO	SoyBase	E_val: 4.00E-180	ISS
UniRef100_UPI000189D55F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D55F related cluster n=1 Tax=unknown RepID=UPI000189D55F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g19600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g19600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g190600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g19600

Limit To All Plant Sequences

>Glyma11g19600.2   sequence type=transcript   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTCCTGTTGTATACATATGGTAGTATGGTTGAAAAGTAGGAAGTTAGGATCCTGGGAAAGTTGAAGACATCGTGTGTCAATAGTCCAATTCTTGTACTTATTGGCCTCAGCTCAAGACATGCAAGTGATTTCATCTGAGAATTGAGAATGAGTAAATATTTCCTCAAGATTGAGTGATATTCAGCTAAGAAAGTTAATGCCATGTTGCCACCTAAATAATACCATCTCAACAGTAAACTTTGGTAGCATTAACCAAGCATCCTTGCCAAACCAGCTACTATACTGTATGCACCAGATTCAAAGCATAAGACTAAAGTCAGATTATCAATTCCCAAAACTGCAACCCATCTTCAGAGTCTGCTTTCTCTATTGTGTCTTTTTGCATGAACAAGAAGCTCATTGCTGAAGAGAAAAAAAAATGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGTTGCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATTTTCACATTTGGGGACTCAATTGTAGATGTTGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGGGACTTTGAGAATCACTTTCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTATTGAATGGTGCCAACTTTGCCTCAGCTTCTTCTGGTTACTTTGAATTGACATCCAAACTATATAGTTCAATTCCATTGAGCAAGCAGCTTGAATACTACAAGGAGTGCCAGACCAAATTGGTGGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAACAAGCTTTATACAACTGATCAATTCTCAGACACTCTCTTGCGATGCTATTCCAATTTCATCCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATTGGTTGCCTTCCTGCAGTCATCACTCTCTTCGGTGCTCATATCAACGAATGTGTGACCAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTAAAAAATATGCTTCCAGGCCTCAATTTGGTCGTCTTTGATATCTACCAACCCCTCTACGACTTGGCCACCAAGCCTTCTGAAAACGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGGTATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCTAATGCATCTGAATATGTATTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGAATTGATTACTTCTGGCATCTCTCTTATATCCTAATCAAACACTTCACGAGTCATACTTTGGATTTCCTACACTTGTGGTTGCTGCTGCTGTTGCATGAAGATGGCTTGTGAAAAAGACTAAGGATATTCTAGATGTTAAATCCCAAAGATCATTGTGTGGTTTTAGGTTCCGTGTTATTGAACAAAGACTTTTTCGTCTAAGGTTGATAATAAAGTGAAAATGAACGCTTATGGCATTTTAAATA

>Glyma11g19600.3   sequence type=transcript   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAGCCAAGAGAAAAAGGTCAAGTGAGGAAAAGACACCTAAAAGGCTCTACATTAGTGCTGTCAGAGGAGGAAGGTTGTGATCACAGTGATCAAAGTGGTGCTGCCACTTTAGTAAATAAGGCACGCAATACAAAAACGCCTCAGCTCAAGACATGCAAGTGATTTCATCTGAGAATTGAGAATGAGTAAATATTTCCTCAAGATTGAGTGATATTCAGCTAAGAAAGTTAATGCCATGTTGCCACCTAAATAATACCATCTCAACAGTAAACTTTGGTAGCATTAACCAAGCATCCTTGCCAAACCAGCTACTATACTGTATGCACCAGATTCAAAGCATAAGACTAAAGTCAGATTATCAATTCCCAAAACTGCAACCCATCTTCAGAGTCTGCTTTCTCTATTGTGTCTTTTTGCATGAACAAGAAGCTCATTGCTGAAGAGAAAAAAAAATGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGTTGCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATTTTCACATTTGGGGACTCAATTGTAGATGTTGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGGGACTTTGAGAATCACTTTCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCTGATATCCTTGGATTTACCTCTTATCAACCAGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTATTGAATGGTGCCAACTTTGCCTCAGCTTCTTCTGGTTACTTTGAATTGACATCCAAACTATATAGTTCAATTCCATTGAGCAAGCAGCTTGAATACTACAAGGAGTGCCAGACCAAATTGGTGGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAACAAGCTTTATACAACTGATCAATTCTCAGACACTCTCTTGCGATGCTATTCCAATTTCATCCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATTGGTTGCCTTCCTGCAGTCATCACTCTCTTCGGTGCTCATATCAACGAATGTGTGACCAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTAAAAAATATGCTTCCAGGCCTCAATTTGGTCGTCTTTGATATCTACCAACCCCTCTACGACTTGGCCACCAAGCCTTCTGAAAACGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGGTATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCTAATGCATCTGAATATGTATTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGAATTGATTACTTCTGGCATCTCTCTTATATCCTAATCAAACACTTCACGAGTCATACTTTGGATTTCCTACACTTGTGGTTGCTGCTGCTGTTGCATGAAGATGGCTTGTGAAAAAGACTAAGGATATTCTAGATGTTAAATCCCAAAGATCATTGTGTGGTTTTAGGTTCCGTGTTATTGAACAAAGACTTTTTCGTCTAAGGTTGATAATAAAGTGAAAATGAACGCTTATGGCATTTTAAATA

Coding sequences of Glyma11g19600

Limit To All Plant Sequences

>Glyma11g19600.1   sequence type=CDS   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGTTGCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATTTTCACATTTGGGGACTCAATTGTAGATGTTGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGGGACTTTGAGAATCACTTTCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCTGATATCCTTGGATTTACCTCTTATCAACCAGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTATTGAATGGTGCCAACTTTGCCTCAGCTTCTTCTGGTTACTTTGAATTGACATCCAAACTATATAGTTCAATTCCATTGAGCAAGCAGCTTGAATACTACAAGGAGTGCCAGACCAAATTGGTGGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAACAAGCTTTATACAACTGATCAATTCTCAGACACTCTCTTGCGATGCTATTCCAATTTCATCCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATTGGTTGCCTTCCTGCAGTCATCACTCTCTTCGGTGCTCATATCAACGAATGTGTGACCAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTAAAAAATATGCTTCCAGGCCTCAATTTGGTCGTCTTTGATATCTACCAACCCCTCTACGACTTGGCCACCAAGCCTTCTGAAAACGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGGTATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCTAATGCATCTGAATATGTATTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGAATTGATTACTTCTGGCATCTCTCTTATATCCTAA

>Glyma11g19600.2   sequence type=CDS   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGTTGCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATTTTCACATTTGGGGACTCAATTGTAGATGTTGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGGGACTTTGAGAATCACTTTCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTATTGAATGGTGCCAACTTTGCCTCAGCTTCTTCTGGTTACTTTGAATTGACATCCAAACTATATAGTTCAATTCCATTGAGCAAGCAGCTTGAATACTACAAGGAGTGCCAGACCAAATTGGTGGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAACAAGCTTTATACAACTGATCAATTCTCAGACACTCTCTTGCGATGCTATTCCAATTTCATCCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATTGGTTGCCTTCCTGCAGTCATCACTCTCTTCGGTGCTCATATCAACGAATGTGTGACCAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTAAAAAATATGCTTCCAGGCCTCAATTTGGTCGTCTTTGATATCTACCAACCCCTCTACGACTTGGCCACCAAGCCTTCTGAAAACGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGGTATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCTAATGCATCTGAATATGTATTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGAATTGATTACTTCTGGCATCTCTCTTATATCCTAA

>Glyma11g19600.3   sequence type=CDS   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGTTGCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATTTTCACATTTGGGGACTCAATTGTAGATGTTGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGGGACTTTGAGAATCACTTTCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCTGATATCCTTGGATTTACCTCTTATCAACCAGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTATTGAATGGTGCCAACTTTGCCTCAGCTTCTTCTGGTTACTTTGAATTGACATCCAAACTATATAGTTCAATTCCATTGAGCAAGCAGCTTGAATACTACAAGGAGTGCCAGACCAAATTGGTGGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAACAAGCTTTATACAACTGATCAATTCTCAGACACTCTCTTGCGATGCTATTCCAATTTCATCCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATTGGTTGCCTTCCTGCAGTCATCACTCTCTTCGGTGCTCATATCAACGAATGTGTGACCAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTAAAAAATATGCTTCCAGGCCTCAATTTGGTCGTCTTTGATATCTACCAACCCCTCTACGACTTGGCCACCAAGCCTTCTGAAAACGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGGTATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCTAATGCATCTGAATATGTATTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGAATTGATTACTTCTGGCATCTCTCTTATATCCTAA

Predicted protein sequences of Glyma11g19600

Limit To All Plant Sequences

>Glyma11g19600.1   sequence type=predicted peptide   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMGYSRSFLASFLLAVLLNVTNGQPLVPAIFTFGDSIVDVGNNNHQLTIVKANFPPYGRDFENHFPTGRFCNGKLATDFIADILGFTSYQPAYLNLKTKGKNLLNGANFASASSGYFELTSKLYSSIPLSKQLEYYKECQTKLVEAAGQSSASSIISDAIYLISAGTSDFVQNYYINPLLNKLYTTDQFSDTLLRCYSNFIQSLYALGARRIGVTSLPPIGCLPAVITLFGAHINECVTSLNSDAINFNEKLNTTSQNLKNMLPGLNLVVFDIYQPLYDLATKPSENGFFEARKACCGTGLIEVSILCNKKSIGTCANASEYVFWDGFHPSEAANKVLADELITSGISLIS*

>Glyma11g19600.2   sequence type=predicted peptide   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMGYSRSFLASFLLAVLLNVTNGQPLVPAIFTFGDSIVDVGNNNHQLTIVKANFPPYGRDFENHFPTGRFCNGKLATDFIAYLNLKTKGKNLLNGANFASASSGYFELTSKLYSSIPLSKQLEYYKECQTKLVEAAGQSSASSIISDAIYLISAGTSDFVQNYYINPLLNKLYTTDQFSDTLLRCYSNFIQSLYALGARRIGVTSLPPIGCLPAVITLFGAHINECVTSLNSDAINFNEKLNTTSQNLKNMLPGLNLVVFDIYQPLYDLATKPSENGFFEARKACCGTGLIEVSILCNKKSIGTCANASEYVFWDGFHPSEAANKVLADELITSGISLIS*

>Glyma11g19600.3   sequence type=predicted peptide   gene model=Glyma11g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMGYSRSFLASFLLAVLLNVTNGQPLVPAIFTFGDSIVDVGNNNHQLTIVKANFPPYGRDFENHFPTGRFCNGKLATDFIADILGFTSYQPAYLNLKTKGKNLLNGANFASASSGYFELTSKLYSSIPLSKQLEYYKECQTKLVEAAGQSSASSIISDAIYLISAGTSDFVQNYYINPLLNKLYTTDQFSDTLLRCYSNFIQSLYALGARRIGVTSLPPIGCLPAVITLFGAHINECVTSLNSDAINFNEKLNTTSQNLKNMLPGLNLVVFDIYQPLYDLATKPSENGFFEARKACCGTGLIEVSILCNKKSIGTCANASEYVFWDGFHPSEAANKVLADELITSGISLIS*

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