Glyma11g19540 - SoyBase

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Report for Sequence Feature Glyma11g19540

Feature Type:	gene_model
Chromosome:	Gm11
Start:	16303319
stop:	16307682
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22770	AT	Annotation by Michelle Graham. TAIR10: alpha-adaptin \| chr5:7579844-7588026 REVERSE LENGTH=1012	SoyBase	E_val: 5.00E-55	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030117	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane coat	SoyBase	N/A	ISS
GO:0030131	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
PTHR22780	Panther	ADAPTIN, ALPHA/GAMMA/EPSILON	JGI		ISS
PTHR22780:SF4	Panther	ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A)	JGI		ISS
PF01602	PFAM	Adaptin N terminal region	JGI		ISS
UniRef100_B9SN68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit alpha, putative n=1 Tax=Ricinus communis RepID=B9SN68_RICCO	SoyBase	E_val: 5.00E-60	ISS
UniRef100_I1LTQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LTQ5_SOYBN	SoyBase	E_val: 5.00E-66	ISS

Expression Patterns of Glyma11g19540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g19540 not represented in the dataset	Glyma11g19540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g19540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g190100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g19540

Limit To All Plant Sequences

>Glyma11g19540.1   sequence type=CDS   gene model=Glyma11g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGTCCGGAATGAGAGGTCTCTCCGTCTTCGTCAGCGACATCCGCAATTGTCAGAACAAGGAACAGGTGAGGCTCCGCGTCGACAAGGAACTTGGCAACATCCGAAAGCGCTTCAAAACCGAGAAGGTGTCTGTTGAGTATACTGTTAGGAAATGTAAACTTTGTGCAGCATTTGACAGAATAGACCTGTATGTTGATGTTATTCTTCAGTTAATTGACAAGGCTGGAGAATTTATTAGTGATGACATTTGGTTTTGTGTGGTGCAATTTGTTACAAACAATGAAGACCTACAGCCCTACACTGCAGCAAAAGCTCGAGAGTATCTTGACAAACCTGCTATACATGAAACAATGGTTAGTGAATATATCCTTGGGGAGTTTGGACACCTTCTAGTTAGACAACCTGGATGTAGTCCAAAGGTAATATTTAACATTATACATGAGAAGCTTCCTACTGTATCCTCTAAGGTTTGTCATAATGCTATAGAAAAAGGTGCATCTCTAATGGATATATTGGCTGAAATGCCTAAATTCCCCAAGCGGCAGTCTGCAATGATAAAAAAGGCTGAGGATACTGATGTCGATGCTACAGAGCAAAGTGCCATTAATGGAACTCCACCTGTCAGCCAACTTAGCCTTGTTTGTAACTGA

Predicted protein sequences of Glyma11g19540

Limit To All Plant Sequences

>Glyma11g19540.1   sequence type=predicted peptide   gene model=Glyma11g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSGMRGLSVFVSDIRNCQNKEQVRLRVDKELGNIRKRFKTEKVSVEYTVRKCKLCAAFDRIDLYVDVILQLIDKAGEFISDDIWFCVVQFVTNNEDLQPYTAAKAREYLDKPAIHETMVSEYILGEFGHLLVRQPGCSPKVIFNIIHEKLPTVSSKVCHNAIEKGASLMDILAEMPKFPKRQSAMIKKAEDTDVDATEQSAINGTPPVSQLSLVCN*

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