Glyma11g19410 - SoyBase

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Report for Sequence Feature Glyma11g19410

Feature Type:	gene_model
Chromosome:	Gm11
Start:	16089614
stop:	16092759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44860	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L24e family protein \| chr2:18501034-18502128 REVERSE LENGTH=159	SoyBase	E_val: 8.00E-78	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1723	KOG	60s ribosomal protein L30 isolog	JGI		ISS
PTHR10792	Panther	60S RIBOSOMAL PROTEIN L24	JGI		ISS
PTHR10792:SF3	Panther	gb def: Putative ribosomal protein L30 (Fragment)	JGI		ISS
PF01246	PFAM	Ribosomal protein L24e	JGI		ISS
UniRef100_B7FMU0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein rlp24 n=1 Tax=Medicago truncatula RepID=B7FMU0_MEDTR	SoyBase	E_val: 9.00E-85	ISS
UniRef100_I1LKV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LKV6_SOYBN	SoyBase	E_val: 3.00E-122	ISS

Expression Patterns of Glyma11g19410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19410

Paralog	Evidence	Comments
Glyma12g09090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g188900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g19410

Limit To All Plant Sequences

>Glyma11g19410.2   sequence type=transcript   gene model=Glyma11g19410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATCATGCTATCCCGCTATAGCATTTTGGCTATGGCAAGTTGGTAACTACTAACTGGTAGACATCCAAGAGTAATGAATGACTATGTATGTTCATAGCTCCACTTCACTTCACATGGCACATATAATTCAGGTTTCTGACAACTGTTCTTCAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTCAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCCGAGTCGCCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAACAGAAGCTGCATATGGAGGCAGTTAGGGAGTTGGAACAGGGCATCAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTTTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCCCAACAACAACAATCAGAGGAGAATCATCCCATGGAAGAGTGATGTCATGCCAATGCTGCACTTTCAACCCCAGTTTTGTGATTATGTGTTTCATATGTGGATTCAGTGTCCAAATTACAATTTGGTTCATTGCTGATCCGACATGTGAATGATGCGATTTTGAAACAAAAGTTTTGGCCGTTGAGAATATGTTAGTGATATTGTTTTTGGACAATAATAATACTGTGTGATACTGCACTATTATATAAAGCAAAGCAGAAAGACGTTGTCCAACATGAAGTCTCCTTGGACCTATTGTACCTGTCACTGTCAGGAGTATTCAATCTGTTAATATCAAGTCAAATGTTAAATTAGTAGGAAAGTAAAAGTTCTTTATACTAGGTACTTCAGTCAAGAACAAATTTGACTGTTGAACGTCTATTTAGGTAGTGTTTGGTTAAGGAAAAAAAGAGAAAAATAAAGAATAA

Coding sequences of Glyma11g19410

Limit To All Plant Sequences

>Glyma11g19410.1   sequence type=CDS   gene model=Glyma11g19410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCACATACCCTGGACATGGAATCCAGTTTGTTCGTAACGATGCCAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTCAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCCGAGTCGCCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAACAGAAGCTGCATATGGAGGCAGTTAGGGAGTTGGAACAGGGCATCAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTTTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCCCAACAACAACAATCAGAGGAGAATCATCCCATGGAAGAGTGA

>Glyma11g19410.2   sequence type=CDS   gene model=Glyma11g19410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCCGAGTCGCCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAACAGAAGCTGCATATGGAGGCAGTTAGGGAGTTGGAACAGGGCATCAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTTTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCCCAACAACAACAATCAGAGGAGAATCATCCCATGGAAGAGTGA

Predicted protein sequences of Glyma11g19410

Limit To All Plant Sequences

>Glyma11g19410.1   sequence type=predicted peptide   gene model=Glyma11g19410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLEKCWFCSSTTYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVAREEKHHKNRMKGKKQKLHMEAVRELEQGISLVKAPSVLQKDPFLTLPKIKVGVSQQQQSEENHPMEE*

>Glyma11g19410.2   sequence type=predicted peptide   gene model=Glyma11g19410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVAREEKHHKNRMKGKKQKLHMEAVRELEQGISLVKAPSVLQKDPFLTLPKIKVGVSQQQQSEENHPMEE*

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