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Report for Sequence Feature Glyma11g19370

Feature Type:gene_model
Chromosome:Gm11
Start:16058554
stop:16061089
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44716AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16263230-16263751 FORWARD LENGTH=145 SoyBaseE_val: 3.00E-12ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LKV3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKV3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g19370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g19370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g188500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g19370
>Glyma11g19370.1   sequence type=CDS   gene model=Glyma11g19370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCATTCAAGATACTCCATATGCATCTTCTTCATTCTTTACTCTTATTCAATATCATATTATGTTCTTCTATACCCCAGCATAATCATGCAAACTTCTGTGGGAATATCAAAACTCAAACACCTTTCTTGGATTCCAATTCTTCTATGTTAGACAACATCACCTTGTGCATATCTCAGAATCTCTACTTGAGAACATCCCTTGGCCTTTTTCATGTTTCATCACTTGACAACAATGGTAGATTACTAACCATCACTCACTCTTCTTGTTCTTCTCTCCAATATGTTTCTCCTCTGGCTGTCACATCTGGTTTCCCTTCTCCTCCAGAACCTAACTCCCTTGTTCTCTTCAACTGCTCAAGCAGAAGAGACACCACTTTACCAATCATGCAAAATTGTAGTGACCTGTACAAATGTGGAGGTGCTGGTTCACCACCTTCTAGGCCTCAAGAGCACCTGGAACATCCTTATTCATGTTTTTTTGTTGAAGATTTGCAAAAGGTGGATAAGGATTTTCACCCTGAACATCTGAATTGTTCTCATTACAGCTGGGTGCATAGAAGTACTTCAGATGGTGGACATGATCAGGGATATAAGGTGGGAACAAGGTTATCTGTCGACATTCCACGTGTACCAGAAATTTGTCAAGGGTGTGAAAAGCCTAATGGAAACTGTGGTGCTGGGTTGAATTGCTTATGCCACCCTAAAGAGTGCAAAGACAAGGTCATCTCCAAGGCTGGGATAAAATCTACTGCTAGTGCTTTTTTCTCTATGCTTTCTTTGATTGGTTCAGTTACTGTAGCCTACTAG
Predicted protein sequences of Glyma11g19370
>Glyma11g19370.1   sequence type=predicted peptide   gene model=Glyma11g19370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPFKILHMHLLHSLLLFNIILCSSIPQHNHANFCGNIKTQTPFLDSNSSMLDNITLCISQNLYLRTSLGLFHVSSLDNNGRLLTITHSSCSSLQYVSPLAVTSGFPSPPEPNSLVLFNCSSRRDTTLPIMQNCSDLYKCGGAGSPPSRPQEHLEHPYSCFFVEDLQKVDKDFHPEHLNCSHYSWVHRSTSDGGHDQGYKVGTRLSVDIPRVPEICQGCEKPNGNCGAGLNCLCHPKECKDKVISKAGIKSTASAFFSMLSLIGSVTVAY*






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