SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27760 | AT | Annotation by Michelle Graham. TAIR10: tRNAisopentenyltransferase 2 | chr2:11824860-11827432 FORWARD LENGTH=466 | SoyBase | E_val: 2.00E-172 | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA processing | SoyBase | N/A | ISS |
| GO:0009691 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: AMP dimethylallyltransferase activity | SoyBase | N/A | ISS |
| GO:0052381 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA dimethylallyltransferase activity | SoyBase | N/A | ISS |
| KOG1384 | KOG | tRNA delta(2)-isopentenylpyrophosphate transferase | JGI | ISS | |
| PTHR11088 | Panther | TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED | JGI | ISS | |
| PTHR11088:SF21 | Panther | TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE | JGI | ISS | |
| PF01715 | PFAM | IPP transferase | JGI | ISS | |
| UniRef100_A8W7I2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA isopentenyltransferase n=1 Tax=Lotus japonicus RepID=A8W7I2_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CE6E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE6E related cluster n=1 Tax=unknown RepID=UPI000233CE6E | SoyBase | E_val: 0 | ISS |
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Glyma11g19330 not represented in the dataset |
Glyma11g19330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g09140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g188100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g19330.1 sequence type=CDS gene model=Glyma11g19330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGACAGAGAGCACAGTAACTTCAAACCCTAGCAACAGAGAACGACCAAAGCCAAAGCCAAAGCTACTAGTCATAACGGGCCCCACCGCTTCCGGGAAGTCGAAGCTAGCCGTTGATTTGGCCTCCCACTTCCCCGTCGAACTCATCAACGCCGATTCCATGCAGGTCTACCGCGGCCTCGATGTTCTCACCAACAAACTCCCTCTCTCTCACCAGAACGGAGTTCCGCATCATCTCTTGGGTACCGTAAGCCCCAACGTGGAATTCACTGCCAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGATATATTGGCTCGTAATCACTTGCCTGTTATAGTTGGGGGCACTAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGATCCAACTGGGTCTGGTAACAATTTCATTGGTGAAAATGACTGTTCAAACAATAGTTATGACCTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAATTTGTACAATCGCACTGGTGTTCTTCCTAGCAATATTTTTCAAGGAAAGGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGCATGAGGGATTACTCAATGAAGTCTATGACATTTATAACTTGAATGCAGTTTATACTAGAGGTTTGCGGCAAGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGCATGAAAGAGAGAGGGAATTGACTGAAGGATCCAGCATAGAAAAGGGAGAGACATTATTTAATCATAATTTGATGGAGTTGGTGAGATCTTCCTCTAATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGCTTAATACCCGAAGACTTATTCGCCGTCAGAAGAGGATGCTCAGTCGACTGCAAACTCTGTTTGGTTGGAACATACACTATGTTGATTCCACAGAATCAATATCAAGCAAATCAGAAGATGTATGGACCCGGCAAGTGGTTGAATCTGCTGTGAAGATAGTCAAATCTTTCCTGAGTGAGAATGGAACCATCTTTGGGACGTCAAATGACACGGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGCGGAGATCGTGTGCTTAGAGGATTTCATGAATGGGAGCAACACAGACAAGGTCGAGGGCACCGAAAACGTATATCTCGTCTTAAGAGAAAGGCACAAGTTCCTGGTTTCGTGGAAGAGGTGAAGTATTCTGCGTCTGAACAGTTAGATATTTAA
>Glyma11g19330.1 sequence type=predicted peptide gene model=Glyma11g19330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATESTVTSNPSNRERPKPKPKLLVITGPTASGKSKLAVDLASHFPVELINADSMQVYRGLDVLTNKLPLSHQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNHLPVIVGGTNYYIQALVSPFLLDDSAEDMDESCLGDPTGSGNNFIGENDCSNNSYDLLKDIDPVAANRIHPNNHRKINQYINLYNRTGVLPSNIFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMHEGLLNEVYDIYNLNAVYTRGLRQAIGVREFEPLLRTCVVKDMHERERELTEGSSIEKGETLFNHNLMELVRSSSNTESTILLEEAIEKVKLNTRRLIRRQKRMLSRLQTLFGWNIHYVDSTESISSKSEDVWTRQVVESAVKIVKSFLSENGTIFGTSNDTGMKIIQRDLWTQYICKACGDRVLRGFHEWEQHRQGRGHRKRISRLKRKAQVPGFVEEVKYSASEQLDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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