Glyma11g19290 - SoyBase

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Report for Sequence Feature Glyma11g19290

Feature Type:	gene_model
Chromosome:	Gm11
Start:	15993224
stop:	15999519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44680	AT	Annotation by Michelle Graham. TAIR10: histone deacetylase 9 \| chr3:16226769-16229752 REVERSE LENGTH=426	SoyBase	E_val: 0	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004407	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity	SoyBase	N/A	ISS
KOG1342	KOG	Histone deacetylase complex, catalytic component RPD3	JGI		ISS
PTHR10625	Panther	HISTONE DEACETYLASE	JGI		ISS
PTHR10625:SF28	Panther	HISTONE DEACETYLASE 1, 2 ,3	JGI		ISS
PF00850	PFAM	Histone deacetylase domain	JGI		ISS
UniRef100_C6TEG5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=C6TEG5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C3BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C3BC related cluster n=1 Tax=unknown RepID=UPI000233C3BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g19290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19290

Paralog	Evidence	Comments
Glyma12g09190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g187800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g19290

Limit To All Plant Sequences

>Glyma11g19290.1   sequence type=CDS   gene model=Glyma11g19290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCCAAGGACAAAATCGCTTACTTCTACGACGGTGATGTCGGTAGTGTATACTTTGGGGCGAAGCATCCAATGAAGCCCCACCGGCTTTGCATGACTCATCATCTTGTTCTCTCATACGATCTTCATAAGAAGATGGAGATTTACCGTCCACACAAGGCTTATCCTGTTGAGCTTGCCCAGTTTCATTCAGCTGATTATGTTGAGTTTTTGAACAGGATTACACCTGACACTCAGCACTTGTTCTTGAAGGAACTGACAAAATATAATCTTGGAGAAGACTGCCCTGTATTTGACAACTTATTTGAATTTTGTCAGATTTATGCTGGTGGAACTATAGATGCTGCACGTCGATTAAACAATCAATTGTGTGATATTGCTATAAACTGGGCCGGTGGACTACATCATGCTAAGAAATGCGAGGCATCTGGATTTTGTTACATCAATGACTTGGTTTTAGGAATCTTGGAGCTTCTTAAATATCATGCTCGTGTTTTGTATATTGATATAGATGTGCACCATGGTGATGGTGTAGAAGAAGCCTTCTACTTCACTGACAGGGTGATGACTGTCAGTTTTCACAAGTACGGAGATTTGTTCTTCCCAGGTACTGGCGATGCTAAGGAAATAGGAGAAAGAGAAGGAAAGTTTTATGCCATAAATGTCCCATTGAAGGATGGAATAGATGACAGTAGCTTCACTCGACTTTTCAAGACTATTATTTCCAAAGTACTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGACTCGCTTGCTGGCGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCACGCTGAATGTGTTAGCTTCGTAAAGAGATTCAATTTGCCATTGCTGGTCACTGGAGGTGGGGGGTACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACAGGAGTTCTTCTAGATACAGAGCTTCCAAATGAGATTCCGGAAAATGATTATATTAAATATTTTGCACCAGAATTTTCTTTGAAGATTCCAAATGGGCAGATAGAAAATTTGAATAGTAAATCATATCTTAGCACCATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCAAGTGTACAGATGCAGGAGGTCCCTCCGGACTTCTACATTCCAGAGTTCGATGAAGATGAGCAGAACCCTGATGAACGCCTTGATCAGCACACTCAAGACAAGCACATTCAGCGCGATGATGAATACTATGACGGTGACAATGACAATGATCAAATGGATGTTTCATGA

Predicted protein sequences of Glyma11g19290

Limit To All Plant Sequences

>Glyma11g19290.1   sequence type=predicted peptide   gene model=Glyma11g19290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKTIISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERLDQHTQDKHIQRDDEYYDGDNDNDQMDVS*

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