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Report for Sequence Feature Glyma11g19285

Feature Type:gene_model
Chromosome:Gm11
Start:15992340
stop:15992603
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00680AT Annotation by Michelle Graham. TAIR10: photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508 SoyBaseE_val: 3.00E-45ISS
GO:0006091GO-bp Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0009767GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009521GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem SoyBaseN/AISS
GO:0009523GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009539GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II reaction center SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016168GO-mf Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding SoyBaseN/AISS
PF00421PFAM Photosystem II protein JGI ISS
UniRef100_E0WH67UniRef Annotation by Michelle Graham. Best UniRef hit: Photosystem II cp47 protein (Fragment) n=2 Tax=Vitellaria paradoxa RepID=E0WH67_9ERIC SoyBaseE_val: 9.00E-46ISS
UniRef100_E0WH67UniRef Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II cp47 protein (Fragment) n=2 Tax=Vitellaria paradoxa RepID=E0WH67_9ERIC SoyBaseE_val: 9.00E-46ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g19285 not represented in the dataset

Glyma11g19285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g19285.1   sequence type=CDS   gene model=Glyma11g19285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGGTCTAAAATTCCCAAAAAATTAACTTTTTATGATTATATCGGAAATAATCCAGCAAAAGGGGGGTTATTTAGAGCAGGTTCAATGGACAATGGAGATGGAATAGCCGTCGGTTGGTTAGGACATCCTGTCTTTAGAGATAAAGAGGGGCATGAACTTTTTGTACGTGGTATGCCTACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGATGGGGACGGAATTGTTAGGGCCGAACTTATGACTCCAATTGTAAGATAA

>Glyma11g19285.1   sequence type=predicted peptide   gene model=Glyma11g19285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AWSKIPKKLTFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRDKEGHELFVRGMPTFFETFPVVLVDGDGIVRAELMTPIVR*







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