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Report for Sequence Feature Glyma11g19280

Feature Type:gene_model
Chromosome:Gm11
Start:15989259
stop:15992263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44620AT Annotation by Michelle Graham. TAIR10: protein tyrosine phosphatases;protein tyrosine phosphatases | chr3:16193858-16195422 FORWARD LENGTH=239 SoyBaseE_val: 2.00E-93ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0004725GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity SoyBaseN/AISS
KOG3217 KOG Protein tyrosine phosphatase JGI ISS
PTHR11717Panther LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE JGI ISS
PTHR11717:SF7Panther LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE 1 JGI ISS
PF01451PFAM Low molecular weight phosphotyrosine protein phosphatase JGI ISS
UniRef100_C6T3N3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3N3_SOYBN SoyBaseE_val: 2.00E-132ISS
UniRef100_G7JKW9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Low molecular weight protein-tyrosine-phosphatase slr0328 n=1 Tax=Medicago truncatula RepID=G7JKW9_MEDTR SoyBaseE_val: 7.00E-109ISS

Expression Patterns of Glyma11g19280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g19280 not represented in the dataset
Glyma11g19280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19280
ParalogEvidenceComments
Glyma12g09200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g187700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g19280
>Glyma11g19280.1   sequence type=CDS   gene model=Glyma11g19280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACCCTCCGTCACAGACACCGAAACGAAGCCGTTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACTGACTTAGTCAACGAAAGTGGCCTCAATTCGAAGTTCAAAATCGATTCCGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATCCGAGAATGAGGGCAGCTTCAAAGAGGCGTGGGATTCTGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGATGATTCACATAAAAAGGTTAAGTTGATGTGCTCGTATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCTTATTATGGTGGACATCAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAAGAATCCTAA
Predicted protein sequences of Glyma11g19280
>Glyma11g19280.1   sequence type=predicted peptide   gene model=Glyma11g19280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPSVTDTETKPFSVLFVCLGNICRSPAAEGVFTDLVNESGLNSKFKIDSAGTINYHEGNEADPRMRAASKRRGILITSISRPIKPSDFVDFDLILAMDKQNKEDILEAFNRWKGRHSLPDDSHKKVKLMCSYCKKHDESEVPDPYYGGHQGFEKVLDLLEDACGSLLETILAENKHVQES*






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