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Report for Sequence Feature Glyma11g19260

Feature Type:gene_model
Chromosome:Gm11
Start:15973159
stop:15977510
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16000AT Annotation by Michelle Graham. TAIR10: MAR binding filament-like protein 1 | chr3:5431041-5433613 REVERSE LENGTH=726 SoyBaseE_val: 4.00E-160ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0042646GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid nucleoid SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG0963 KOG Transcription factor/CCAAT displacement protein CDP1 JGI ISS
UniRef100_G7JKW2UniRef Annotation by Michelle Graham. Most informative UniRef hit: MAR-binding filament-like protein 1-1 n=1 Tax=Medicago truncatula RepID=G7JKW2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CE6CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CE6C related cluster n=1 Tax=unknown RepID=UPI000233CE6C SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g19260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19260
ParalogEvidenceComments
Glyma12g09230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g187500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g19260
>Glyma11g19260.1   sequence type=CDS   gene model=Glyma11g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTACCTTCTGCTTACTCCACTCTCCCCTCTATCAATTCCCATCTTCATCTTCTTCTTCTTCTGGGCCCATAAAATTGCGAGCTTCCACAACATCTTGCTTGGGGCAGCAAGACAAAGAGCCACTCTGCAACAGAAGAACCGTTCTTTTGACCAGCATCGCTCTTCTTCCGTTTCGCCGTTTGAAGCGGGCCCCAGCTCTCGAATCCCCACCTCCACCTCCACCCCCTACAGAAGAAACCGACGTGAAGACACAAGAGGATAACCAGGAAGCCGAGAAAGCACCTGAAGTGGACCAACCGTCAAATTCCTTTCTGCTTCTCCTGAATGGAATTGGAATATTTTCTTCTGGTGTGTTGGGTGCTCTCTATACACTTGCTCAGAAAGAAAAGTCCACTGCTGTTGCAACAATAGAAACAATGAGCAGCAAACTGAAGGAAAAGGAAGAACTGATTGTTTCCTTGAAGAAGAACTATGAGTTGAAGTTACTAAACAAGCGGGAGGAACAAGCCAAGCTACTTGAAAAGGCAAAGGAAGAGCAACTGGCACTGATAAACCAACTGAATTCTGCAAACAGTACTATTAACCGCTTGGGGCAGGAGCTTAAAAATGAGAGAAGTTTGATTGAGGACCTGAAACTTCAAATTGACCGACTTAAAGCTGAGCTTTCAAAGACTGATACAGATAAGAAGGATCTTGAAAACAATTTGAAAGAAAAGATAGATTCCATTGGTGTTTTACAAGAAAGAATCAATCTGCTGAGTGTGGACCTCAAGGACAAAGAAGATGCTGTTCAGAATCTCAATTCATCCCAAGCAGAAAAGGAGTTGGAATTGAAGAGTTTGAAGTCTACCTATGAGCAAACCAAGGATGACTTAATAAATGTTCAATTGCAGATTCAAGGGTTGAAAGATGAACTACTGAAAACCCAAGAGGAACTAGAAGCTAAAGATTCCTTGGTGATAGAACTAAATTCAAGAGTGAGTTCCTTAACTATTGAGAACAATAATTTTAGGAGTAAATGTGATGTCATGGAGAAGGAATACAATGATCTAAAGTTCAGTGCTGTAAAGAAGGCTGCTTTGGACTCTAAGGTTTTAAGAGAAAAAGAAGAGGAGCTTCATCAGCTAAAGGATCAGTTTGAACTTGCCCTAGGTGAAGCAAGCAAAAGCCAGATCGTCATTGCTGATTTATCCCAAGAAAGAGATGATTTGAAGGAGGCTCTAGATAATGAATCTAGCAAGGTGAATCATTTGAAGCAAGAACTCCAAGTTACCCTGGAGAATCTTGCAAAATCAAGAAATGAGTCTGCTGAATTGGAAAACCTTCTAACTTTGTCAAACAAACTGTGCAAAGAGCTCGAGCTCGAGGTCTCTAAGCTCTCATCTGAGCTCACTGAGGTTAATGAATCGCTACAGAGAAACCTTGATGATGCGAAACATGAGGCAGAAATGCTAGCAAGTGAGCTTACAACTGCCAAGGAACACTTGAAGGAAGCACAAGCAGAGCTGCAAGGTGTGTCAAAAGAATTGACAGCTGCTCTTGAAAAGAATGATAGCCTACAAAAAGAATTAGTTGAAGTCTACAAAAAGGCTGAAAGCACAGCAGAGGATTTGAAGGAACAAAAACAGTTAGTTGCTTCTCTGAACAAAGATTTACAAGCATTAGAGCAGCAAGTCTCAAAAGACAAGGAGTCCCGAAAATCTCTTGAGAGGGACCTGGAGGAGGCGACCATATCACTAGATGAAATGAACCGAAATGCGGTGATCCTTTCTGGGGAACTACAGAGAGCTAATTCTCTTGTTTCTAGCCTTGAAAAAGAGAAAGATGTGCTTATTAAGTCCCTAACCAACCAAAGAAATGCATGCAAAGAGGCCCAAGACAACATTGAAGATGCTCATAACCTTATCATGAAACTTGGCAAAGAAAGAGAGAATTTAGAGAAAAAAGGTAAGAAATTTGAAGAGGAATTGGCTTCTGCCAAGGGTGAGATATTGCGCTTGAAGAGTCGAATCAATTCTTCAAAAGTTGCTGTTAACAATGGCCCAGTGCAGAAAGATGGAGGTGAAAAAAAGGTCAACCCTTCAAAAGTTGCGGTAAACAATGAGCAAGCACAGAAAGATGAAGGTGAAAACAAGGTTACTGTAAGTGCACGGAAGACTGTCAGAAGAAGAAAGGCTAATCCACAATAA
Predicted protein sequences of Glyma11g19260
>Glyma11g19260.1   sequence type=predicted peptide   gene model=Glyma11g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTFCLLHSPLYQFPSSSSSSSGPIKLRASTTSCLGQQDKEPLCNRRTVLLTSIALLPFRRLKRAPALESPPPPPPPTEETDVKTQEDNQEAEKAPEVDQPSNSFLLLLNGIGIFSSGVLGALYTLAQKEKSTAVATIETMSSKLKEKEELIVSLKKNYELKLLNKREEQAKLLEKAKEEQLALINQLNSANSTINRLGQELKNERSLIEDLKLQIDRLKAELSKTDTDKKDLENNLKEKIDSIGVLQERINLLSVDLKDKEDAVQNLNSSQAEKELELKSLKSTYEQTKDDLINVQLQIQGLKDELLKTQEELEAKDSLVIELNSRVSSLTIENNNFRSKCDVMEKEYNDLKFSAVKKAALDSKVLREKEEELHQLKDQFELALGEASKSQIVIADLSQERDDLKEALDNESSKVNHLKQELQVTLENLAKSRNESAELENLLTLSNKLCKELELEVSKLSSELTEVNESLQRNLDDAKHEAEMLASELTTAKEHLKEAQAELQGVSKELTAALEKNDSLQKELVEVYKKAESTAEDLKEQKQLVASLNKDLQALEQQVSKDKESRKSLERDLEEATISLDEMNRNAVILSGELQRANSLVSSLEKEKDVLIKSLTNQRNACKEAQDNIEDAHNLIMKLGKERENLEKKGKKFEEELASAKGEILRLKSRINSSKVAVNNGPVQKDGGEKKVNPSKVAVNNEQAQKDEGENKVTVSARKTVRRRKANPQ*






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