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Report for Sequence Feature Glyma11g19220

Feature Type:gene_model
Chromosome:Gm11
Start:15907653
stop:15915726
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20890AT Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0363 KOG Chaperonin complex component, TCP-1 beta subunit (CCT2) JGI ISS
PTHR11353Panther CHAPERONIN JGI ISS
PTHR11353:SF23Panther CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, BETA SUBUNIT, TCPB JGI ISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_G7KRA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit beta n=1 Tax=Medicago truncatula RepID=G7KRA6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LKU1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKU1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g19220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19220
ParalogEvidenceComments
Glyma12g09250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g185500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g19220
>Glyma11g19220.1   sequence type=CDS   gene model=Glyma11g19220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTGATAATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGTGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGACATATCAAAAGTACAAGATGATGAGGTTGGGGATGGAACTACCTCAGTTGTTGTATTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAGCCAAGATTCATCCTATGACAATAATATCAGGTTTCCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGTTGGAGAAGGTTGTGGACAACAAAGCAGATTCTGAGAAATTCAGGTCAGACTTATTGAACATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGATCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACTAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAGCGGATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAAATTGAAACAGCAGAGAAAGAGAAAATGAGAGAAAAGGTGCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTGGCTATTGAACATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTGGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTGAGTCTGTTAAGCTTGGGCATTGTGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGTGCTATCTCAGACTGTCAATGACAGTAGAGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAAGAAGTTGATGCGTTGGCTAAGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATTCCAACGATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAACTCCGGGCAGAGCATCAGAAGGAGGGCTGTACTTCTGGAATTGATGTTATTTCTGGCTCTGTTGGAGACATGGCTGAACGCGGAATATCTGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGAAATCATCACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA
Predicted protein sequences of Glyma11g19220
>Glyma11g19220.1   sequence type=predicted peptide   gene model=Glyma11g19220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIDNIFKHEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRSDLLNIAMTTLSSKILSQDKDHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLMDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDALAKKTPGKKSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTSGIDVISGSVGDMAERGISEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM*






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