Glyma11g19190 - SoyBase

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Report for Sequence Feature Glyma11g19190

Feature Type:	gene_model
Chromosome:	Gm11
Start:	15880583
stop:	15889215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33790	AT	Annotation by Michelle Graham. TAIR10: Jojoba acyl CoA reductase-related male sterility protein \| chr4:16204325-16207891 REVERSE LENGTH=493	SoyBase	E_val: 3.00E-176	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0010025	GO-bp	Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016620	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0016627	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors	SoyBase	N/A	ISS
GO:0080019	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA reductase (alcohol-forming) activity	SoyBase	N/A	ISS
KOG1221	KOG	Acyl-CoA reductase	JGI		ISS
PTHR11011	Panther	MALE STERILITY PROTEIN 2-RELATED	JGI		ISS
PTHR11011:SF1	Panther	MALE STERILITY PROTEIN 2	JGI		ISS
PF03015	PFAM	Male sterility protein	JGI		ISS
PF07993	PFAM	Male sterility protein	JGI		ISS
UniRef100_G9GAX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fatty acyl-CoA reductase 3 n=1 Tax=Populus tomentosa RepID=G9GAX3_POPTO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C261	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C261 related cluster n=1 Tax=unknown RepID=UPI000233C261	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g19190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g19190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g185300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g19190

Limit To All Plant Sequences

>Glyma11g19190.2   sequence type=transcript   gene model=Glyma11g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATCAAAGATAGAAAGAACAATTTAAGAGAAATTAGATTCAACATCCATTTTACACGTCTCTCATGAAGATAGCTCTACATACCAATTGTTGGTTCTAATTTAAGAAAAAAAAACATAAGAGAGAAGAAAAAAAAACGTGAGTTTAATTTGGAACAATTGACATAATTTTTTATTGAATAAATTTTATATTTAAATATATTTAAAATAACTGAATAAAAAGATTATACTCAACTATTTTAGGAACTGCTACAATACCAGGAGAATAACTAATTCAAATTAAAAATCAAAACTATCTTGACAGCATCTAAGACATGTTCAACAACAATTATTATTATTACATGAGCTAAAACAATAAATTAAATTTCTTTGTTATTTTGCTCTCTTTGCCTTCCTTATTGCTTTTCGATTCATTATTTTCTTTTCCTTGATCTACTTTGAAGGGATTAAATGTGGTGAGTAAGGTATGTTGCCATTGTTACGATGATTTTCACATGGAAAGTCAACGAAAACTCCAAACATTGATGAAAATAACAAGACTTTATAAACCTTATCTCCTATTTGAGGGCACCTTTGATGACAAGAACGCAGAAATTTTACGGATGGCAAAAAACAAAGCAGGAGATGATCTTGGGAGATTTAACTTTGATCCCAGGAACATTGATTGGATGGACTATGTGTTAAACGCCCACATTCCTGGACTCGTGAAGTATGTTGTTAAGTAAGATGTAATAATATATAGCTCTTATGTTTGCATATATATATATATATATATATATAT

Coding sequences of Glyma11g19190

Limit To All Plant Sequences

>Glyma11g19190.1   sequence type=CDS   gene model=Glyma11g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTAGCAAGTGTTCACGACTTTCTAAAGGGAAAAACCATTTTAGTTACCGGTGCAACGGGATTCTTAGCAAAACTTTTCGTGGAGAAGATATTAAGGGTTCAACCAAACATAAAGAAGTTATACCTTCTTCTAAGAGCAGAAAATCCTCATATAGCTACCCAACGCTTGCACGATGAGGTTTTGGCGAAGGACTTGTTCAAGGTGGTACGAGAAATGTGGGGTGCAGATTTTGGCTCCTTCATATCCGAGAAAGTGTTGGCTGTTGCTGGCGATGTTTCTCTTGAGAACTTGGGACTTAAAGACCTAAACCTAAGGGAAAAGATGTGGGAAGATATAGATATCATAGTTCACGCTGCTGCTGCTACCAAGTTTGACGAGAGATTTGATATTGCAATGAGCATAAACACGATGGGAGCTCTTCATGCTCTGAACTTCGCTAAGAACTGTAGTAAAATGCAAATTCTTCTCCACTTATCTACTGCTTACGTATGCGGTGAGGCCAAAGGACTAGTACCTGAGGAGCCTTTTCACATGGGTCAGACCCCAAATAGGTCCTCAACATTAGACATCAACGTTGAAAAACTGCTAATTGAGGAAAAAATGGAGGAGCTCCGGGCACAAAATGCTGGTGAACAAACAGCCACATCGGTCATGAAAAACCTTGGAATTATAAGGGCAAATTTACACGGATGGCCAAATGCCTATGTATTTACAAAAGCGATGGGAGAGATGATTTTGTTCAATATGAAAGGTGATGTACCTTTGATCATCGCACGCCCTACTACAGTACTCAGCACTCACTCTGAACCATTCCCCGGTTGGATTGAAGGTGTGAGAACGGTTGATGTTTTTGTTGTCTTGTACGGTAAAGGAAAATTAAGAAGATCGGTTGGTCGTCGGAATACAATTATCGACGCGATACCAGCTGACATGGTGATAAATTCCATGATAATAGCATTATTAGAGGCTCAATATTCAAAGAGCCTTTCCAAGACATTGCTTTACCATATTGGTTCTTCGTTGAGAAATCCATTCACAATTTCCGATCTTGAGGATGTAGCCTATCAATACTTCACAAAAAATCCTTTGATCAACAAAAATGGAAAACCCGTGGCTATCTCCAACAAAGTTACGTGGATCTCTAGTATGAGTTCATTTGAAAGATACATGAAGATTCGATACGTGCTACCTCTAATGGGATTAAATGTGGTGAGTAAGGTATGTTGCCATTGTTACGATGATTTTCACATGGAAAGTCAACGAAAACTCCAAACATTGATGAAAATAACAAGACTTTATAAACCTTATCTCCTATTTGAGGGCACCTTTGATGACAAGAACGCAGAAATTTTACGGATGGCAAAAAACAAAGCAGGAGATGATCTTGGGAGATTTAACTTTGATCCCAGGAACATTGATTGGATGGACTATGTGTTAAACGCCCACATTCCTGGACTCGTGAAGTATGTTGTTAAGTAA

>Glyma11g19190.2   sequence type=CDS   gene model=Glyma11g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTCAACGAAAACTCCAAACATTGATGAAAATAACAAGACTTTATAAACCTTATCTCCTATTTGAGGGCACCTTTGATGACAAGAACGCAGAAATTTTACGGATGGCAAAAAACAAAGCAGGAGATGATCTTGGGAGATTTAACTTTGATCCCAGGAACATTGATTGGATGGACTATGTGTTAAACGCCCACATTCCTGGACTCGTGAAGTATGTTGTTAAGTAA

Predicted protein sequences of Glyma11g19190

Limit To All Plant Sequences

>Glyma11g19190.1   sequence type=predicted peptide   gene model=Glyma11g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELASVHDFLKGKTILVTGATGFLAKLFVEKILRVQPNIKKLYLLLRAENPHIATQRLHDEVLAKDLFKVVREMWGADFGSFISEKVLAVAGDVSLENLGLKDLNLREKMWEDIDIIVHAAAATKFDERFDIAMSINTMGALHALNFAKNCSKMQILLHLSTAYVCGEAKGLVPEEPFHMGQTPNRSSTLDINVEKLLIEEKMEELRAQNAGEQTATSVMKNLGIIRANLHGWPNAYVFTKAMGEMILFNMKGDVPLIIARPTTVLSTHSEPFPGWIEGVRTVDVFVVLYGKGKLRRSVGRRNTIIDAIPADMVINSMIIALLEAQYSKSLSKTLLYHIGSSLRNPFTISDLEDVAYQYFTKNPLINKNGKPVAISNKVTWISSMSSFERYMKIRYVLPLMGLNVVSKVCCHCYDDFHMESQRKLQTLMKITRLYKPYLLFEGTFDDKNAEILRMAKNKAGDDLGRFNFDPRNIDWMDYVLNAHIPGLVKYVVK*

>Glyma11g19190.2   sequence type=predicted peptide   gene model=Glyma11g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQRKLQTLMKITRLYKPYLLFEGTFDDKNAEILRMAKNKAGDDLGRFNFDPRNIDWMDYVLNAHIPGLVKYVVK*

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