SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44530 | AT | Annotation by Michelle Graham. TAIR10: homolog of histone chaperone HIRA | chr3:16116026-16121247 FORWARD LENGTH=1040 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression, epigenetic | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0973 | KOG | Histone transcription regulator HIRA, WD repeat superfamily | JGI | ISS | |
| PTHR13831 | Panther | MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF07569 | PFAM | TUP1-like enhancer of split | JGI | ISS | |
| UniRef100_G7ITP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone transcription regulator HIRA n=2 Tax=Medicago truncatula RepID=G7ITP8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CE66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE66 related cluster n=1 Tax=unknown RepID=UPI000233CE66 | SoyBase | E_val: 0 | ISS |
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Glyma11g19140 not represented in the dataset |
Glyma11g19140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g184900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g19140.2 sequence type=CDS gene model=Glyma11g19140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGATCGCTGAGAAACCTAGCTGGGTTAGGCATGAGGGCATGCAAATTTTCTCCATTGATGTTCAACCTGGTGGGCTCCGGTTTGCTACTGGTGGTGGTGACCACAAGGTTCGAATATGGAATATGAAGTCTGTTTGTGGGGAGTCTGGGGACATAGGAAATGATGAGTCTTCTCAGAGGCTTCTTGCAACCCTGCGGGATCGTTTTGGGTCTATTAACTGTGTTAGGTGGGCTAAGCATGGTAGGTATAGAAAGTCCGGTTTGGGAACCACGAAATTTGGCAGTGGAGAGCCACCGAATATTGAATACTGGAAAGTTGCTTTGACTTTGAGAGGGCACGTTGCATATCTGGTGGGTCTTAATTGGTCTCCTGATGACTCCACATTAGCTAGTGGGAGTTTGGACAACACTATTCATATATGGAACATGAGCAATGGTATTTGCACTGCTGTTCTGAGGGGCCACACAAGTCTGGTTAAGGGGGTTGCATGGGATCCTATTGGATCTTTTATAGCAAGTCAATTTGATAATAAAACTCTTGGGTCTACCTTTTTCAGGCGTCTTGGATGGTCTCCCTGTGGGCATTTTGTCACCACTACTCATGGTTTCCAGAAACCAAGGCATTCTGCCCCTGTACTTGAGAGAGGGGAATGGTCTGCAACGCTTGACTTCTTAGGACATAATGCTCCAATTATTGTGGTCAAGTTCAACAATTCAATGTTTAGAAGGAATTTCTATAATGCTCAAGAAGTGAAGTCTGTGGATGTTGGGTGGGCCAATGGTGCTTCCAAGACAGGAAGCAAAGAGCCACAGCCTTACAATGTTATTGCCATCGGAAGTCAGGATCGAACTATAACTGTATGGACTACTGCAAGTCCCTGTCCTCTCTTTGTTGCTAAGCATTTCTTTACTAAGAGCCCTAATGGATATTCACTTTTTGCCTGTTCCTTGGATGAATCTGTGGCTACATTTCATTTTGAGGTGAAAGAACTTGGACGGAGACTTAGTGATGCTGAGCTAGATGAGTTGAAGCGAAATCGCTATGGCGATCTTCTGCCAAGCAAAAAAGTGGTTTCTGATGTCCGACAAAACCAGACAGTGGAAAAAGGTTATGATGATGTGCACATTGCTTCAAAGAAAGCTGAGCCTCAAGTTGATGATTGTAAGAAGAGTGGAGGTACTATTGGTGATGGGTTAAGCAACGCTACCGCCTCTGCCCGAATTTCTAACCCTGTCAAGCAAAGAGAATATAGACGACCTGATGGAAGAAAAAGAATAATTCCAGAAGCAGTTGGAGTGCCTGTTCAGCAGGAAAACATTTCTTGTGTAGTTCAGTCCCAAGCTCATGATTTCCCTCTCATTCTGATCACAGAATGGGTAACATTTGAGTTTACATTGGGTGGTGCACTTGGCAGGAAATCAGATTTAAAAGAACGTTCTGGGGTTACTGCTCGGGCCATAGTTTTGGAGAGCCTAGGGATTGAGAAAGTTCCAGCTTCTTCTGGCATAGATGGAAATATCAATGTTGAGCAGTTGGGAAATTCCACGACTACTGGTTCCTTGTCTGCTTCTTGTGCTACTCTTTCCATTAGGGTATTTGACTACAAAAGTGGGGCAGATACTTCACCTATTTGTTTGGAAGCACGCCTGAGAGAACATGCTGTGAATGACATTATAGGAATAGGGAATACGTCCATGATGAGAGAAACGGAAATTGCTTGCACAAGGGGTCCTCAAACACTTTGGTCTGATAGGATATCAAGAAAAGTCACTGTTTTAGCTCGAAATGCAAATTTTGGGGCAGTTGGGTGTGAAGATGGATGTTTTCAGAAAGAATCTCCTTCCTTTGCACTTACCAACTCTGTACAAGTTGTTAGTGTGCATTCCCTCTGCACACGCACTATTAAAGTTATATTTGCAAGGCTATCAAAATCTGGTTCTCCTCTTGTCGTTTTGGCCACTCGTCAAGCTTTCCTATTTGACATGAGTCTCAAGTGTTGGCTAAGGGTTGCAGATGACTGCTTCCCTGCATCAAATTTTGCCAGCTCTTGGAGTATGGGCTCAATTCAAAGTGGTGAACTTGCTGCTTTGCAGGTTGATGTTAGAAAATATTTGGCACGGAAGCCAGGCTGGACTAGATTGACTGATGATGGAGTGCAGACACGCGCTCACTTGGAAGCTCAGTTGGCCTCTGCTTTGGCTTTGGAATCCTCCAAAGAATATCGGCAATGCCTATTGTCCTATGTACACTTTCTTGCTAGAGAAGCAGATGAATCTCGATTACGAGAACTCTGA
>Glyma11g19140.2 sequence type=predicted peptide gene model=Glyma11g19140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KIAEKPSWVRHEGMQIFSIDVQPGGLRFATGGGDHKVRIWNMKSVCGESGDIGNDESSQRLLATLRDRFGSINCVRWAKHGRYRKSGLGTTKFGSGEPPNIEYWKVALTLRGHVAYLVGLNWSPDDSTLASGSLDNTIHIWNMSNGICTAVLRGHTSLVKGVAWDPIGSFIASQFDNKTLGSTFFRRLGWSPCGHFVTTTHGFQKPRHSAPVLERGEWSATLDFLGHNAPIIVVKFNNSMFRRNFYNAQEVKSVDVGWANGASKTGSKEPQPYNVIAIGSQDRTITVWTTASPCPLFVAKHFFTKSPNGYSLFACSLDESVATFHFEVKELGRRLSDAELDELKRNRYGDLLPSKKVVSDVRQNQTVEKGYDDVHIASKKAEPQVDDCKKSGGTIGDGLSNATASARISNPVKQREYRRPDGRKRIIPEAVGVPVQQENISCVVQSQAHDFPLILITEWVTFEFTLGGALGRKSDLKERSGVTARAIVLESLGIEKVPASSGIDGNINVEQLGNSTTTGSLSASCATLSIRVFDYKSGADTSPICLEARLREHAVNDIIGIGNTSMMRETEIACTRGPQTLWSDRISRKVTVLARNANFGAVGCEDGCFQKESPSFALTNSVQVVSVHSLCTRTIKVIFARLSKSGSPLVVLATRQAFLFDMSLKCWLRVADDCFPASNFASSWSMGSIQSGELAALQVDVRKYLARKPGWTRLTDDGVQTRAHLEAQLASALALESSKEYRQCLLSYVHFLAREADESRLREL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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