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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27600 | AT | Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435 | SoyBase | E_val: 0 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007032 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endosome organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0016197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endosomal transport | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005771 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0739 | KOG | AAA+-type ATPase | JGI | ISS | |
| PTHR23074 | Panther | AAA ATPASE | JGI | ISS | |
| PTHR23074:SF4 | Panther | AAA-FAMILY ATPASE | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF04212 | PFAM | MIT (microtubule interacting and transport) domain | JGI | ISS | |
| PF09336 | PFAM | Vps4 C terminal oligomerisation domain | JGI | ISS | |
| UniRef100_B9SCR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein VPS4, putative n=1 Tax=Ricinus communis RepID=B9SCR4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LKT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKT2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g19120 not represented in the dataset |
Glyma11g19120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g09300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g184700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g19120.2 sequence type=transcript gene model=Glyma11g19120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTACGAACAGAATACGCATCCAAAATAAAATACCATTCGATCTTAATCCAAGGATCACAATCGATGAACGTATATATCCGTAAACACACGGAATCCGTCTGCGTTTGAAGGAAGGTTCGACGGAAGAATCTTCTCTGACTCGCCCAAACCAAACGCTTTTTTTTTCTTTCCACGCGCAGACTAACACCCTTTCCTTCTTCTTCGTTCGGATCAGATTCTTGGAATTCTGAATCAAAATTCTCAGAAGAAGGAGATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTATGCGAAAGCGTTTCAGCTTTACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCGGTCCTCGACGACGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACACGGCCCAAGACGAAGCCCAAGGACGGAGGGAAAGACGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCGATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTAGAGAGCGCGAAGCAGGCGCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAGCGACGACCTTGGAGAGCGTTCTTGTTGTACGGACCGCCGGGGACGGGGAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATAATATTCGTTGATGAAATAGATTCTCTATGTGGTCAACGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAGGAATCCTGAGGGTATGTGGATCCCATGTGGGCCAAAGCAACAGGGTTCAGTGCAAACTACAATGCAGGATATTGCTGCGAAAGGACTTGCTTCTAAGGTATTCAAGATGCTGCGGATTTTGATGACAGTAGGACTGGAGAACTTCTTTTTCTAAATGATAATCAGATAATAACAGTTTTTATATTCTTGTTTGCTGTACAGATCCTCCCACCTCCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACCGTAAGCAAGTCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAATTCTGACGGAATTTTTCTTCAATCATCTGCACTAGCTTAAACATGTTATGATTTGTAATTTACAGTGCTATTGGATCAAGTGAAATGCATATTTTTACTAATCATAATTTGTGTATAAGAACAGACTGATGAAATAATCAGAAAAATAAATTTGATGTGAATATGTGATTCTGGTTACTCATGTTGGTCTTCATTTTGAATGTAGGTGTCCTAAATTTTAAGATAGTTTTAGGTTTTGAGTTTTTTCAGATTCCAAGCTAGGGCGGGGTTGACAATTTTA
>Glyma11g19120.1 sequence type=CDS gene model=Glyma11g19120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTATGCGAAAGCGTTTCAGCTTTACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCGGTCCTCGACGACGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACACGGCCCAAGACGAAGCCCAAGGACGGAGGGAAAGACGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCGATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTAGAGAGCGCGAAGCAGGCGCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAGCGACGACCTTGGAGAGCGTTCTTGTTGTACGGACCGCCGGGGACGGGGAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATAATATTCGTTGATGAAATAGATTCTCTATGTGGTCAACGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAGGAATCCTGAGGGTATGTGGATCCCATGTGGGCCAAAGCAACAGGGTTCAGTGCAAACTACAATGCAGGATATTGCTGCGAAAGGACTTGCTTCTAAGATCCTCCCACCTCCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACCGTAAGCAAGTCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA >Glyma11g19120.2 sequence type=CDS gene model=Glyma11g19120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTATGCGAAAGCGTTTCAGCTTTACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCGGTCCTCGACGACGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACACGGCCCAAGACGAAGCCCAAGGACGGAGGGAAAGACGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCGATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTAGAGAGCGCGAAGCAGGCGCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAGCGACGACCTTGGAGAGCGTTCTTGTTGTACGGACCGCCGGGGACGGGGAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATAATATTCGTTGATGAAATAGATTCTCTATGTGGTCAACGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAGGAATCCTGAGGGTATGTGGATCCCATGTGGGCCAAAGCAACAGGGTTCAGTGCAAACTACAATGCAGGATATTGCTGCGAAAGGACTTGCTTCTAAGGTATTCAAGATGCTGCGGATTTTGATGACAGTAGGACTGGAGAACTTCTTTTTCTAA
>Glyma11g19120.1 sequence type=predicted peptide gene model=Glyma11g19120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFRNPEGMWIPCGPKQQGSVQTTMQDIAAKGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* >Glyma11g19120.2 sequence type=predicted peptide gene model=Glyma11g19120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFRNPEGMWIPCGPKQQGSVQTTMQDIAAKGLASKVFKMLRILMTVGLENFFF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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