Glyma11g19060 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g19060

Feature Type:	gene_model
Chromosome:	Gm11
Start:	15705538
stop:	15709326
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g19060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08290	AT	Annotation by Michelle Graham. TAIR10: WIP domain protein 3 \| chr1:2610680-2613180 REVERSE LENGTH=337	SoyBase	E_val: 1.00E-122	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
PTHR10593:SF10	Panther	ATM INTERACTOR (ATM/ATR-SUBSTRATE CHK2-INTERACTING	JGI		ISS
UniRef100_B9SCR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 1 protein, putative n=1 Tax=Ricinus communis RepID=B9SCR9_RICCO	SoyBase	E_val: 6.00E-157	ISS
UniRef100_I1LKS6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LKS6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g19060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19060

Paralog	Evidence	Comments
Glyma12g09400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g184000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g19060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g19060

Limit To All Plant Sequences

>Glyma11g19060.1   sequence type=CDS   gene model=Glyma11g19060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTAATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTATTCATATCTAAACAATTCCAACACAATATTATCATCATCTTCTTCTCCTTCTTCTTCTTTTTCTTTTACTCATAATCAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAAAAGAAGGCCTCAAAAGATGAGGAAGATCAAACGTTTGATGAGGTGAAAGAGGAAAAGGTTAAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGACACTAGTAAAGGGCATGCTGATGATGAGGTTGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAAGAGTCCTCAAAGAGAAGCTTCCATGGATGCTCCTTTAACAACAACCAAGAGAGAAGGTTTTGGATTCCTACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGATCACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAACCATCCAAGGGCTAAGCCATTGAAGGACTTCAGAACCCTCCAAACACATTACAAAAGAAAGCATGGCACAAAGCCATTCATGTGTAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCACTTAAGGATCATATTAGGTCTTTTGGAAAGGGACATAAACCTCATCCTCCCTTTGAAGCCTTTGAGGATGAGAAGGAATGCATTACTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA

Predicted protein sequences of Glyma11g19060

Limit To All Plant Sequences

>Glyma11g19060.1   sequence type=predicted peptide   gene model=Glyma11g19060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNYSYLNNSNTILSSSSSPSSSFSFTHNQFVQETIQFLPILSEKKASKDEEDQTFDEVKEEKVKQVTVALHIGLPDTSKGHADDEVVDEKMIFHVKEEEEESSKRSFHGCSFNNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGSQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPPFEAFEDEKECITTGSDEDEVNAHHT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain