SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g19026

Feature Type:gene_model
Chromosome:Gm11
Start:15641732
stop:15650160
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g19026
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08320AT Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein | chr1:2622113-2627451 REVERSE LENGTH=481 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF51Panther OS12G0152900 PROTEIN (FRAGMENT) JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_G7JIE0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor TGA6 n=1 Tax=Medicago truncatula RepID=G7JIE0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LRG0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LRG0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g19026
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g19026 not represented in the dataset
Glyma11g19026 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g19026
ParalogEvidenceComments
Glyma12g09430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g19026 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g183700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g19026
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g19026
>Glyma11g19026.2   sequence type=transcript   gene model=Glyma11g19026   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTACTCACACAAAGTATTTACAACCAGCTAGGAGCAAGTAAGTGATAAAGCAAGCCAAACACACTTATCAATCAGGTTTCTTCCCAGAGAAGGAGAAAAAGAGAGATAGGGACACCCCATGAAAGATAAAATGTTGCAAAGAGGACTCATACATGAGAAAAAGACTGGACCCTCTTCTTGTGGCAACTTATGTATTACTTTGACAGGAAAGCTTTGATCTTTCGTTACTGTGTGAACTTGTCCATATAGTATTCTTTTTGTCCATAGAATTCCAAAGAAAACAGAGTTTCAACTTCAGAGAAGGTGAGAATGGTCTAAGAAGAAGCCTTGCATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATATCCCTTATGGAGTTCTTCATGGGATTAATACTTCATCATCAGCCCTAATCAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGAGGAAAGCAGTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAACAGCAGCAGCAGCAGCAACAACAACAACACGAGACAGCAACAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTACACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGATGAGTTTATGGGATGTGGTGGTGCTGGTGGCAGTATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAAATGGTTAGAGGATGACCAGCGGCACATAGTGGAGCTCCGGTCGGGGCTGCAGACGCCGCTGTCGGACGGCGAACTAAGAGTGATTGTGGATGGATTTCTGTCTCATTATGATGAAGTTTTCAGGCTGAAAGGGGTGGCTGCTAAAACAGATGTGTTTCATCTTATTAATGGCACATGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCATCAGAGCTCATCACAATGTTGATACCACAGTTAGAGCCCCTGGCGGAGCAGCAAATTATGGTCATATGTGAACTCGGGCATTCGTCACTGCAAACAGAAGAAGCTCTCAGTCAAGGTCTTGAACAGCTTCAGCAGTCTCTTGTTGACACCATTGCCGGCGGGCCCATCGCCGACGGTGTTCAACAGATGGTGGCAGCCATGACCAAGCTTGGCCACCTTGAAGAATTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTGCTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTCATTGATCAGTGATGATAACTCATGCCAAACAACCACTGAATTGCAAATGGTTCAATCTTCTCAGAATCATTTCTCAAGTTTCTGAAATACATTGTAATTGAAACCTGGTGCAAGTGGATTTCTTTGGGCTGCTTTAGAAAGAATGGAAAAGAGTGTCAGCATCATCAAAGAATTAATATCTTTTTTTTTTCTTCTTTCAATCTTCCTCTCGTGTCTCTTATGTTTTGTAATAATTAAATGGAATTCGAGTTTTATGTGAATGACGAGGAAGCTCTTCTACTTTAGCTAAAAGGAGTAGAGAAATTTAATGATATAAAGGAACGAATATGACATGTGAGATGTGTGTGTGTGTGTATATATATATATATATATATGTAATGCTAGTCTCC
Coding sequences of Glyma11g19026
>Glyma11g19026.1   sequence type=CDS   gene model=Glyma11g19026   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATATCCCTTATGGAGTTCTTCATGGGATTAATACTTCATCATCAGCCCTAATCAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGAGGAAAGCAGTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAACAGCAGCAGCAGCAGCAACAACAACAACACGAGACAGCAACAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTACACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGATGAGTTTATGGGATGTGGTGGTGCTGGTGGCAGTATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAAATGGTTAGAGGATGACCAGCGGCACATAGTGGAGCTCCGGTCGGGGCTGCAGACGCCGCTGTCGGACGGCGAACTAAGAGTGATTGTGGATGGATTTCTGTCTCATTATGATGAAGTTTTCAGGCTGAAAGGGGTGGCTGCTAAAACAGATGTGTTTCATCTTATTAATGGCACATGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCATCAGAGCTCATCACAATGTTGATACCACAGTTAGAGCCCCTGGCGGAGCAGCAAATTATGGTCATATGTGAACTCGGGCATTCGTCACTGCAAACAGAAGAAGCTCTCAGTCAAGGTCTTGAACAGCTTCAGCAGTCTCTTGTTGACACCATTGCCGGCGGGCCCATCGCCGACGGTGTTCAACAGATGGTGGCAGCCATGACCAAGCTTGGCCACCTTGAAGAATTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTGCTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTCATTGATCAGTGATGATAACTCATGCCAAACAACCACTGAATTGCAAATGGTTCAATCTTCTCAGAATCATTTCTCAAGTTTCTGA

>Glyma11g19026.2   sequence type=CDS   gene model=Glyma11g19026   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATATCCCTTATGGAGTTCTTCATGGGATTAATACTTCATCATCAGCCCTAATCAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGAGGAAAGCAGTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAACAGCAGCAGCAGCAGCAACAACAACAACACGAGACAGCAACAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTACACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGATGAGTTTATGGGATGTGGTGGTGCTGGTGGCAGTATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAAATGGTTAGAGGATGACCAGCGGCACATAGTGGAGCTCCGGTCGGGGCTGCAGACGCCGCTGTCGGACGGCGAACTAAGAGTGATTGTGGATGGATTTCTGTCTCATTATGATGAAGTTTTCAGGCTGAAAGGGGTGGCTGCTAAAACAGATGTGTTTCATCTTATTAATGGCACATGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCATCAGAGCTCATCACAATGTTGATACCACAGTTAGAGCCCCTGGCGGAGCAGCAAATTATGGTCATATGTGAACTCGGGCATTCGTCACTGCAAACAGAAGAAGCTCTCAGTCAAGGTCTTGAACAGCTTCAGCAGTCTCTTGTTGACACCATTGCCGGCGGGCCCATCGCCGACGGTGTTCAACAGATGGTGGCAGCCATGACCAAGCTTGGCCACCTTGAAGAATTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTGCTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTCATTGATCAGTGATGATAACTCATGCCAAACAACCACTGAATTGCAAATGGTTCAATCTTCTCAGAATCATTTCTCAAGTTTCTGA
Predicted protein sequences of Glyma11g19026
>Glyma11g19026.1   sequence type=predicted peptide   gene model=Glyma11g19026   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQRIGETGLSESGPSSHHIPYGVLHGINTSSSALINQGSAFDFGELEEAIVLQGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFQQTSRGGSKSGEESSDSGSGVNTLSSKNELQFETESPISIKASSSDHHQAFDQHLQQQQQQQQQQQHETATAGTSSQNQSAAKSPQEKRKGAGYTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQDEFMGCGGAGGSISSGAAMFDMEYAKWLEDDQRHIVELRSGLQTPLSDGELRVIVDGFLSHYDEVFRLKGVAAKTDVFHLINGTWTSPAERCFLWIGGFKPSELITMLIPQLEPLAEQQIMVICELGHSSLQTEEALSQGLEQLQQSLVDTIAGGPIADGVQQMVAAMTKLGHLEEFVAQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRESLISDDNSCQTTTELQMVQSSQNHFSSF*

>Glyma11g19026.2   sequence type=predicted peptide   gene model=Glyma11g19026   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQRIGETGLSESGPSSHHIPYGVLHGINTSSSALINQGSAFDFGELEEAIVLQGIKIRNDEAKASLFTGRPSATLEMFPSWPMRFQQTSRGGSKSGEESSDSGSGVNTLSSKNELQFETESPISIKASSSDHHQAFDQHLQQQQQQQQQQQHETATAGTSSQNQSAAKSPQEKRKGAGYTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQDEFMGCGGAGGSISSGAAMFDMEYAKWLEDDQRHIVELRSGLQTPLSDGELRVIVDGFLSHYDEVFRLKGVAAKTDVFHLINGTWTSPAERCFLWIGGFKPSELITMLIPQLEPLAEQQIMVICELGHSSLQTEEALSQGLEQLQQSLVDTIAGGPIADGVQQMVAAMTKLGHLEEFVAQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRESLISDDNSCQTTTELQMVQSSQNHFSSF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo