Glyma11g18930 - SoyBase

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Report for Sequence Feature Glyma11g18930

Feature Type:	gene_model
Chromosome:	Gm11
Start:	15536156
stop:	15543918
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g18930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27460	AT	Annotation by Michelle Graham. TAIR10: sec23/sec24 transport family protein \| chr2:11740670-11744867 FORWARD LENGTH=745	SoyBase	E_val: 0	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0030127	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1985	KOG	Vesicle coat complex COPII, subunit SEC24/subunit SFB2	JGI		ISS
PTHR13803	Panther	SEC24-RELATED	JGI		ISS
PF04810	PFAM	Sec23/Sec24 zinc finger	JGI		ISS
PF04811	PFAM	Sec23/Sec24 trunk domain	JGI		ISS
PF04815	PFAM	Sec23/Sec24 helical domain	JGI		ISS
UniRef100_B9SCU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein, putative n=1 Tax=Ricinus communis RepID=B9SCU8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LKR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g18930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g18930

Paralog	Evidence	Comments
Glyma12g09540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g18930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g182800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g18930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g18930

Limit To All Plant Sequences

>Glyma11g18930.1   sequence type=CDS   gene model=Glyma11g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGCGGGCCACTGTGTCGCGTTTCCCGATGGACACGGACGCCCGCGAGGGCTCGGGCCTCCTCTGGGGAGTAACCGTCACGCCGTTCTCCGCCGCCGACGAGAATGCCCGCGCTCCGTCGTACGGCTCCGGCGGCGACCTCTTGCCCCGGTGCGAGAACTGCTGGGCCTACTTCAACACCTACTGCGAGCTGGAGCAGTGGTCCTGGTCCTGCTCCCTCTGCGGCAACCTCAACGGCCTCTCCTCCGACGCCATCGACCGCTACTCTCGCCCTCAGTCCTGCGCCGAGATGATGTCCTCCTTCGTAGATCTCGAATTGCCTTCGCAGGAACTGGCGGAGGAAGCGGCAATGCAGGCGTGTCCGGTTTATGTTGCTGCTGTTGACTTGTCGTCTTCAGAGGAGTTTCTAGAACTTACCAAAAGTGCATTGCTGGCAGCTCTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCCTGATGCAGAGGGAACCCTGCCTATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCTGTGGAAACTTATAAGGACCGTATTGCATCTGCACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACGACAGCAGGTCAAGGGCTGGATGGTGTTCTGATAGGTGGGCGTGGTTTTGGGATGGCAATGGAAGCTCTCTGCAATTACCTTGGTTCTGAATATGGGAACACTTTTGCTTTAGCTAGAGTCTTTGCCTTCTTGTCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACGAGACGATATGGTGAACAATATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCCAGAGCAGACACCCTTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATACACAAGTACTGAGGATTCAACATTGCCTCAGGACATGTATCGAATGCTGAGTCGACCATATGTTTTTGGTTGTGTCCTGCGGTTAAGAACCTCGACTGAATTTAAACCTGGCAATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGAAGTAAATCAGATGTTCCTACAATTCAGATTGCATTCCAGTACTCAGTTGTAGTTCCTCCTCAGGAACTTTCTGATTCTAATTCAGGAGGGGTTTCTACAAATAGAACCAAGCACTCCCTTCAGCGTCGGCTAAGGATCCGAACATTGCAATTTGGTGTTGCTCAGAACATTCATGAACTTTATGATAGCTGTGATCCCGAAGTTGTTCTATCTTTGCTTGTTCACAAGGTTATATTAGCCTCTTTGGAGGAAGGAGTTAGGGAGGGTAGAATTTTGCTTCAAGAATGGCTAGTGATCCTGACAGCTCAGTACAATGATGCATATAAGCTTATTCAGTATGATAATGGAAGTTCCATAAGATCTCAGATTGATGTTGCATTCTCTCAATGTCCTCAATTGCAGCCCCTACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGCATGTTGGAACCCAGTTCCCTTCATCGTGCTGTGTATCCCGTGTTGACATCATATGCTACTCCAGATAAACAAGCATATCCTCGCCATTCTTTGAGCCGTGCAGCATTGATTACCAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTGTTTGTTAAGGACTACAATCAACAAATTGAAGCAGGAGAGATGCATCACTCCCAAGCTGATTTTTATTCGAGGAGGGCATGATGATGCCTCAATTTTTGAGAACTTTCTGATCGAAGAGCAGGATGTTGATGGAAGTGGTCTTACCAGTGTTATGGGTTTTGTTTCCTTCCTTGAAGATACTACACAGAAAGTTTTAGAATTCATGAAATAG

Predicted protein sequences of Glyma11g18930

Limit To All Plant Sequences

>Glyma11g18930.1   sequence type=predicted peptide   gene model=Glyma11g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVRATVSRFPMDTDAREGSGLLWGVTVTPFSAADENARAPSYGSGGDLLPRCENCWAYFNTYCELEQWSWSCSLCGNLNGLSSDAIDRYSRPQSCAEMMSSFVDLELPSQELAEEAAMQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPDAEGTLPIELEDVMPLLQFLAPVETYKDRIASALETLRPTTSWERTTTAGQGLDGVLIGGRGFGMAMEALCNYLGSEYGNTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYVFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFVFENNIGFSRSKSDVPTIQIAFQYSVVVPPQELSDSNSGGVSTNRTKHSLQRRLRIRTLQFGVAQNIHELYDSCDPEVVLSLLVHKVILASLEEGVREGRILLQEWLVILTAQYNDAYKLIQYDNGSSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDHRIYLQCLFSMLEPSSLHRAVYPVLTSYATPDKQAYPRHSLSRAALITSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDTTQKVLEFMK*

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