SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22400 | AT | Annotation by Michelle Graham. TAIR10: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466 | SoyBase | E_val: 5.00E-160 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR23177 | Panther | MKIAA1688 PROTEIN | JGI | ISS | |
| PTHR23177:SF2 | Panther | GTPASE ACTIVATING PROTEIN | JGI | ISS | |
| PF00620 | PFAM | RhoGAP domain | JGI | ISS | |
| PF00786 | PFAM | P21-Rho-binding domain | JGI | ISS | |
| UniRef100_G7ITU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rho GTPase activating protein n=1 Tax=Medicago truncatula RepID=G7ITU3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C252 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C252 related cluster n=1 Tax=unknown RepID=UPI000233C252 | SoyBase | E_val: 0 | ISS |
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Glyma11g18900 not represented in the dataset |
Glyma11g18900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g09560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g182600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g18900.2 sequence type=transcript gene model=Glyma11g18900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGATTTTTGGGGTATTCTTTTTTGTTTTCATTTTCATGTTTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTATGACACGAGAGGGAACAGTGTGCCAACCATACTGCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGATAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACAAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACTGAAGAGGATTGCGCTGAACTGGCCAGCCAGCTACCTCACACCGAAGCTTCCCTTTTGGACTGGGCTATTAATTTAATGGCTGATGTTGCCCAAGAGGAACACTTGAATAAGATGAATGCACGGAACATCGCCATGGTTTTTGCACCAAATATGACTCATATGGCAGATCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTAAAGAATCTTATATTAAGGACACTGCGAGAGAGAAAGGATTGTGTGGTAGAATCGTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAACGGGGACAGCAGTCTTCCGGAGTCCTGCCAGCAAGATGATGATGTTGCTGCTGAAAATGAAGAGGCCGGGGAAACCTTTGTTTCTGAGAAAACTGAATTAGAATGTTCGCCTGAGTCCCTCCAAAGCAAATATTCAACTGAAGGAGGATGTGGCAGTTTGATAGGCTCTCCTGAGAATCTGGTTTGTGAGGAGGACTTGTATTGTGAGTTTCCATCCAAAGGAAACATCGGGAAGAGTAAGAGTGTTCAATCAAGTAATTCCAGTTCTAAAAAGGGGTCCCAAAAAACCAGAGGCATGCTCCAACCTGTGATCCATGCAACAGTGGCTGCTGATAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCGAGATCAGAGCGGATAGAAGCCTGGCGGTGAAAGAAGAATCACTGTGATGGAGTGTAGTTTGATTCTGATTGTGCATTGTAGTTGTAAGTTTGTTTCAAGGACAAGTTTGTGAAGTGGTTCAGATTTTTTTCATTTTCCTCAGTTTGTTTAACATGTCTGATTTCTAGAATGACACTATGATAAACACTACTGAAATAACATTTCCCATGTGTGTTTACTTGTGTTCTCAACTACTCATAATTATTCCTGAATGACAGGCCATTCACCTGTCAATGTTGCAATGTATAAGTTAATCACTTGCGGATTCTTACTCTACC
>Glyma11g18900.1 sequence type=CDS gene model=Glyma11g18900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGAGGTGCTTCATTTCTCATCCTCTTCGTCGCCAGCCACTTCTTCTTCCGATGGCATTCTCCAAGAACCACCACCACCTTCTTCTGTGAGCGTGGTGGTGGATGGGTTTTCTACGGTCACCGACTGTGACGCGCGCAGGGTCACGGTCACCGACAGAACGCACCAAGAGCTTTCTCTTCTGGCAATTCTTGTGACCCTTTTGAGGAAATCGCTGATTGCTTGCAACAAGAGCGACGAGGGACAGGGCGCCATGGAGATTGGGTGGCCCACTAACGTGCGCCACGTGGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTATGACACGAGAGGGAACAGTGTGCCAACCATACTGCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGATAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACAAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACTGAAGAGGATTGCGCTGAACTGGCCAGCCAGCTACCTCACACCGAAGCTTCCCTTTTGGACTGGGCTATTAATTTAATGGCTGATGTTGCCCAAGAGGAACACTTGAATAAGATGAATGCACGGAACATCGCCATGGTTTTTGCACCAAATATGACTCATATGGCAGATCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTAAAGAATCTTATATTAAGGACACTGCGAGAGAGAAAGGATTGTGTGGTAGAATCGTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAACGGGGACAGCAGTCTTCCGGAGTCCTGCCAGCAAGATGATGATGTTGCTGCTGAAAATGAAGAGGCCGGGGAAACCTTTGTTTCTGAGAAAACTGAATTAGAATGTTCGCCTGAGTCCCTCCAAAGCAAATATTCAACTGAAGGAGGATGTGGCAGTTTGATAGGCTCTCCTGAGAATCTGGTTTGTGAGGAGGACTTGTATTGTGAGTTTCCATCCAAAGGAAACATCGGGAAGAGTAAGAGTGTTCAATCAAGTAATTCCAGTTCTAAAAAGGGGTCCCAAAAAACCAGAGGCATGCTCCAACCTGTGATCCATGCAACAGTGGCTGCTGATAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCGAGATCAGAGCGGATAGAAGCCTGGCGGTGA >Glyma11g18900.2 sequence type=CDS gene model=Glyma11g18900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTATGACACGAGAGGGAACAGTGTGCCAACCATACTGCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGATAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACAAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACTGAAGAGGATTGCGCTGAACTGGCCAGCCAGCTACCTCACACCGAAGCTTCCCTTTTGGACTGGGCTATTAATTTAATGGCTGATGTTGCCCAAGAGGAACACTTGAATAAGATGAATGCACGGAACATCGCCATGGTTTTTGCACCAAATATGACTCATATGGCAGATCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTAAAGAATCTTATATTAAGGACACTGCGAGAGAGAAAGGATTGTGTGGTAGAATCGTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAACGGGGACAGCAGTCTTCCGGAGTCCTGCCAGCAAGATGATGATGTTGCTGCTGAAAATGAAGAGGCCGGGGAAACCTTTGTTTCTGAGAAAACTGAATTAGAATGTTCGCCTGAGTCCCTCCAAAGCAAATATTCAACTGAAGGAGGATGTGGCAGTTTGATAGGCTCTCCTGAGAATCTGGTTTGTGAGGAGGACTTGTATTGTGAGTTTCCATCCAAAGGAAACATCGGGAAGAGTAAGAGTGTTCAATCAAGTAATTCCAGTTCTAAAAAGGGGTCCCAAAAAACCAGAGGCATGCTCCAACCTGTGATCCATGCAACAGTGGCTGCTGATAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCGAGATCAGAGCGGATAGAAGCCTGGCGGTGA
>Glyma11g18900.1 sequence type=predicted peptide gene model=Glyma11g18900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEVLHFSSSSSPATSSSDGILQEPPPPSSVSVVVDGFSTVTDCDARRVTVTDRTHQELSLLAILVTLLRKSLIACNKSDEGQGAMEIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNRGLVPEDVDIHCLAGQIKAWFRELPTGVLDSLSPEHVMQCQTEEDCAELASQLPHTEASLLDWAINLMADVAQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKNLILRTLRERKDCVVESSPGFCLEPSDENGDSSLPESCQQDDDVAAENEEAGETFVSEKTELECSPESLQSKYSTEGGCGSLIGSPENLVCEEDLYCEFPSKGNIGKSKSVQSSNSSSKKGSQKTRGMLQPVIHATVAADKKGISNLSRIDSRSERIEAWR* >Glyma11g18900.2 sequence type=predicted peptide gene model=Glyma11g18900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNRGLVPEDVDIHCLAGQIKAWFRELPTGVLDSLSPEHVMQCQTEEDCAELASQLPHTEASLLDWAINLMADVAQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKNLILRTLRERKDCVVESSPGFCLEPSDENGDSSLPESCQQDDDVAAENEEAGETFVSEKTELECSPESLQSKYSTEGGCGSLIGSPENLVCEEDLYCEFPSKGNIGKSKSVQSSNSSSKKGSQKTRGMLQPVIHATVAADKKGISNLSRIDSRSERIEAWR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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