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Report for Sequence Feature Glyma11g18370

Feature Type:gene_model
Chromosome:Gm11
Start:15043688
stop:15044870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g18370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44220AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:15928216-15929645 FORWARD LENGTH=206 SoyBaseE_val: 1.00E-76ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_G7IHG4UniRef Annotation by Michelle Graham. Most informative UniRef hit: NHL1 n=1 Tax=Medicago truncatula RepID=G7IHG4_MEDTR SoyBaseE_val: 2.00E-100ISS
UniRef100_I1LKM9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKM9_SOYBN SoyBaseE_val: 4.00E-154ISS

Expression Patterns of Glyma11g18370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g18370 not represented in the dataset
Glyma11g18370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g18370
ParalogEvidenceComments
Glyma12g09880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g18370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g179900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g18370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g18370
>Glyma11g18370.1   sequence type=CDS   gene model=Glyma11g18370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGTCAAAGAGTGCGGCCACCACTCCTCCCAACGCCGCAACCTCCTCCGCCTCATCCTCGGCGCCACCGCCGCCTTCGTCCTCCTCATCCTCCTCACCATCTTCCTCATCTGGGTCATCCTCCGCCCCACAAAGCCCCGCTTCACTCTCCAAGATGCCACCCTCTACGCCTTCAACCTCTCCACTCCCACACCCAACACCCTCACCCTCACCATGCAGGTCACCCTCTCCTCCCACAACCCCAACGCGCGCGTCGGCGTCTACTACCACGCGCTCCACGTCTACGCCTCCTACCGGAGCCAGCAGATCTCCCTCGCCACCGCGCTCCCCGACACCTACCAGGGCCACCGCGACTTCGCCGTCTGGTCGCCGTTTCTATTCGGTAACGTCGTCCCCGTCTCGCCGTTTGTGCTCAGCTCACTGCAGCAGGACCAGAGCGCTGCCGGCGCCGTTTTGGTCAACGTTAAGGTCAACGGGAGGGTCAAGTGGAAGGTCGGGTCTTGGGTCTCTGGGAGGTACCATATCTATGTGAACTGTCCCGCGTATATTAGCTTCGCCGGAGATCGGAGCATTGCCGCCGGAGGACTCGTGGCTTCGCCGGTGAAGTTTCGCCTCTTGCAGAGTTGCAGTGTTGATGTGTAG
Predicted protein sequences of Glyma11g18370
>Glyma11g18370.1   sequence type=predicted peptide   gene model=Glyma11g18370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVKECGHHSSQRRNLLRLILGATAAFVLLILLTIFLIWVILRPTKPRFTLQDATLYAFNLSTPTPNTLTLTMQVTLSSHNPNARVGVYYHALHVYASYRSQQISLATALPDTYQGHRDFAVWSPFLFGNVVPVSPFVLSSLQQDQSAAGAVLVNVKVNGRVKWKVGSWVSGRYHIYVNCPAYISFAGDRSIAAGGLVASPVKFRLLQSCSVDV*






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