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Report for Sequence Feature Glyma11g18141

Feature Type:gene_model
Chromosome:Gm11
Start:14665832
stop:14670837
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g18141
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76810AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294 SoyBaseE_val: 1.00E-99ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0008135GO-mf Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding SoyBaseN/AISS
PTHR23115Panther TRANSLATION FACTOR JGI ISS
PTHR23115:SF41Panther JGI ISS
PF00009PFAM Elongation factor Tu GTP binding domain JGI ISS
PF03144PFAM Elongation factor Tu domain 2 JGI ISS
UniRef100_I1LDH2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDH2_SOYBN SoyBaseE_val: 4.00E-103ISS
UniRef100_Q8H6S8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor n=1 Tax=Pisum sativum RepID=Q8H6S8_PEA SoyBaseE_val: 1.00E-98ISS

Expression Patterns of Glyma11g18141
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g18141 not represented in the dataset
Glyma11g18141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g18141 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U010100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g18141
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g18141
>Glyma11g18141.1   sequence type=CDS   gene model=Glyma11g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACGGACACGGGAAGGAAGAAACCGAGGGAGAATGAGAACCTCGGCTCCCCGATGTTGTGTATCATGGGTCACGTAGATACCGGCAAAACCAAGCTCTTGGATTGTATTCGTGGAACAAATGTTCAGGAGAGGGAACTAATCAATGCAAAGCTGAATCCTCCTGGTCTACTTGTTCTTGATACCCCAGGGCACGAGTCATTTACTTACTTTAGGTTTATGGCTTCTCTTCTATGTGATTTTGCAATTTTGGTTGTTGACACTTTGCATGGGTTAGAGCAACAAACACTAGAATCCCTTTATCTATTAAGAGGCATGAATAAAAAATTCATTGTTGTCTTGAATAATGTTGACAAGCTTCGTGGGTGGAAACCATGTCACAATACTCCAATCACTGAAGCAGTGGAGCAGCAGACTCAGGATGTTCAACTTAAGTTTAATGGGTTGCTTGATGATATTACTTATCTGTTCGAACAAGTGGGACCGAGTACTCAGTATCTGAATACTGACATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCTGAATTGTTATCACTATTGGTTCAATGGACCCAAAAAACAATGGCTCAGAAACTTACATGCAGTGAAAAATTGCAGTGTACTGTTTTAGATGTGGAGGTAGTAGAAGACCATGGAACTACTATTGATTTTGTTTTAGTTAATGGTGTTCTTCACGAAGTAGAACAAATAGTTGTCTGCGGAATGCCGGGGCCAATTGTCACCACAATCCAAGCTTTATTGGCACCTCATCCAATAAAGGAACTCTGTGTCAAGATTGGAACTCCAATCTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCGTTGCCTCCATTGAGAATAACCATCTACCTGTTGATTATGCAAGGAAGGGGCAGAAAGTAGCCATTAAGGAAGCAAAAAGATTATACCTTTTGCACAATGTTGAAAAGGAAAAAAGATCATTAATAAAAATTAGCGTACCCCCGTGCCAGAAGGCACCTCATAGTCCTCGCTATGCGAAGATACCAGGGCGGGTCATTGTAGGCATGCACCTTTTGCTTTCATATGCAAAAAGGTGCATCTTTACTTGCTGTACCAAGGCTTGCTCTCAGAAAAGATCACTAATAACTATTTTAAATTATTTGAAGTAA
Predicted protein sequences of Glyma11g18141
>Glyma11g18141.1   sequence type=predicted peptide   gene model=Glyma11g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTDTGRKKPRENENLGSPMLCIMGHVDTGKTKLLDCIRGTNVQERELINAKLNPPGLLVLDTPGHESFTYFRFMASLLCDFAILVVDTLHGLEQQTLESLYLLRGMNKKFIVVLNNVDKLRGWKPCHNTPITEAVEQQTQDVQLKFNGLLDDITYLFEQVGPSTQYLNTDIVPTSAISGEGIPELLSLLVQWTQKTMAQKLTCSEKLQCTVLDVEVVEDHGTTIDFVLVNGVLHEVEQIVVCGMPGPIVTTIQALLAPHPIKELCVKIGTPICIPSREFIDIGRVASIENNHLPVDYARKGQKVAIKEAKRLYLLHNVEKEKRSLIKISVPPCQKAPHSPRYAKIPGRVIVGMHLLLSYAKRCIFTCCTKACSQKRSLITILNYLK*






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