Glyma11g17310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma11g17310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma11g17310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma11g17310

Feature Type:	gene_model
Chromosome:	Gm11
Start:	13307498
stop:	13307719
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g17310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38470	AT	Annotation by Michelle Graham. TAIR10: ACT-like protein tyrosine kinase family protein \| chr4:17999432-18003551 FORWARD LENGTH=575	SoyBase	E_val: 7.00E-29	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF82	Panther	PROTEIN KINASE ATMRK1	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S5G6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S5G6_RICCO	SoyBase	E_val: 2.00E-29	ISS
UniRef100_I1LKI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LKI2_SOYBN	SoyBase	E_val: 2.00E-34	ISS

Expression Patterns of Glyma11g17310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g17310 not represented in the dataset	Glyma11g17310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g17310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U014200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g17310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g17310

Limit To All Plant Sequences

>Glyma11g17310.1   sequence type=CDS   gene model=Glyma11g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATGACTTTATCAGAGTTTATGTCTGGGGGAAGCTTATATGAATTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATGATATAATTCACAAGGACCTCAAGACTGCCAATCTTTTGATGGATGAAAATGAAGTAAGAAGATTCCATGAATGCACACATTGA

Predicted protein sequences of Glyma11g17310

Limit To All Plant Sequences

>Glyma11g17310.1   sequence type=predicted peptide   gene model=Glyma11g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FMTLSEFMSGGSLYEFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNDIIHKDLKTANLLMDENEVRRFHECTH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain