SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44990 | AT | Annotation by Michelle Graham. TAIR10: carotenoid cleavage dioxygenase 7 | chr2:18558938-18561621 FORWARD LENGTH=629 | SoyBase | E_val: 0 | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010223 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary shoot formation | SoyBase | N/A | ISS |
| GO:0016121 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene catabolic process | SoyBase | N/A | ISS |
| GO:0016124 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xanthophyll catabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0045549 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity | SoyBase | N/A | ISS |
| KOG1285 | KOG | Beta, beta-carotene 15,15'-dioxygenase and related enzymes | JGI | ISS | |
| PTHR10543 | Panther | CARTENOID OXYGENASE | JGI | ISS | |
| PTHR10543:SF1 | Panther | 9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED | JGI | ISS | |
| PF03055 | PFAM | Retinal pigment epithelial membrane protein | JGI | ISS | |
| UniRef100_E2GK54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Carotenoid cleavage dioxygenase 7 n=1 Tax=Glycine max RepID=E2GK54_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_E2GK54 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carotenoid cleavage dioxygenase 7 n=1 Tax=Glycine max RepID=E2GK54_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g16370 not represented in the dataset |
Glyma11g16370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U016700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g16370.1 sequence type=CDS gene model=Glyma11g16370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCCAAACCCATTCACAACACCCCAACATACATTCCTCCACCCATAAGGCCATCACCACCGGTGCACCAAACCCCTCCCTCTATACCATCAATCAAACCTCGTGCAATATCCATATCCGCACCTAATATTCCTATTGCCGTACCAATTCCACCAATTGTAGAGCCTGATGATTCCAATGCTGCTTATTATGACTACCAATTCTTGTTCATGTCACAAAGATCCGAAGCAACCCGACCCGTCACTCTAAGCACCGTGGAAGGTGCGATCCCCGCCGATTTCCCGTCTGGCACGTACTATCTAACCGGACCAGGGCTTCTGGCCGACGATCACGGGTCCACGGTGCACCCTCTAGACGGCCATGGGTACCTAAGGGCATTTACTTTTGATAATAATGTTACTAAGAATGTCAAGTACATGGCTAAGTACATTAAGACGGATGCACATGTGGAGGAACATGACCCTAAGACCAACAAGTGGAAATTCACTCATAGAGGCCCATTTTCAGTGTTGAAGGGTGGAAAAAAAGTTGGGAACACTAAGGTCATGAAAAATGTGGCTAACACTAGTGTTCTAAAGTGGGGGGAAAAGCTCTTGTGTATGTGGGAGGGTGGGGAACCGTATGAGATCCAAGCCGGTACGTTAGATACGATTGGACAGTACAACATGATGGATGGTGCTGATATGGAAAATCATGATCAGAGCAAAGGTGGTGGTGGTGGTGATGTTTGGGAGGTTGCTGCCAACCTATTGAAGCCTATATTATATGGAGTGTTTAAGATGCCCCCAAGGAGACTCTTGTCTCACTATAAGGTCGATTCTAGAAGAAACAGGCTACTCACTGTGTCATGCAATGCAGAAGACATGTTGCTTCCACGCAGTAATTTTACATTTTCCGAATATGACTCAAATTTTAATGTAGTACAGAAGCAAGTTTTCAGAATCCCAGATCACTTGATGATCCATGATTGGGCATTCACGGATACCCACTACATAGTATTTGCCAATCGCATAAAACTTGATGTACTGGGATCAATGGCAGCAGTGTATGGCATGTCTCCAATGATATCAGCATTGAGGGTAAACCCAAGTAAGAGCACATCCCCCATTTACCTGATTCCTAGGTTTCCAGGAAAAAATAATGGCAAAGAGAGAGATTGGAGAGTACCAGTTGAAGCACCTTCACAGTTGTGGTTGCTCCATGTTGGCAATGCCTTTGAAGTTAGACACCCTCATGGGAATTTGGACATAAAAATACAAGCTGCTGCTTGCTCTTACCAGTGGTTCAATTTCAGCAAGTTATTTGGGTACGACTGGCAAAAGAAGAAGCTAGACCCATCAATAATGAATGTAAAAGGTGGAAGTAAGTTATTGCCTCATCTTGTTCAGGTGTCTATAAAACTAGATTCTGACTACAATTGCCAAGAATGTGATGTGAAACCCATGAAGAAATGGAAGAAATCCTCAGATTTTCCTGCTACAAATCCAACGTTTTCTGGCAAGAAGAACAAATATCTCTATGCAGCAACAACCTTAGGATCTCGCAAAACATTGCCATGTTTCCCTTTCGATACCGTTGTGAAATTAGACCTAGAGACTACTGAATCTGTTGCACAAACTTGGACTGCTGGAAGTAGAAGATTTATTGGTGAACCTATTTTTGTTCCCAAAGGTTACCAAGAAGATGATGGCTATCTTCTTGTTGTTGAGTATGCTGTTTCAATGAATAGATGTTACCTTGTCATCTTGGACCCAAAAAGGATAGGAGCAGATAATGCCCTTGTTGCGAGAATCGAAATTCCAAGCCACTTAAATTTTCCTCTAGGTTTTCATGGTTTCTGGGCAGCTAATTAG
>Glyma11g16370.1 sequence type=predicted peptide gene model=Glyma11g16370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAKPIHNTPTYIPPPIRPSPPVHQTPPSIPSIKPRAISISAPNIPIAVPIPPIVEPDDSNAAYYDYQFLFMSQRSEATRPVTLSTVEGAIPADFPSGTYYLTGPGLLADDHGSTVHPLDGHGYLRAFTFDNNVTKNVKYMAKYIKTDAHVEEHDPKTNKWKFTHRGPFSVLKGGKKVGNTKVMKNVANTSVLKWGEKLLCMWEGGEPYEIQAGTLDTIGQYNMMDGADMENHDQSKGGGGGDVWEVAANLLKPILYGVFKMPPRRLLSHYKVDSRRNRLLTVSCNAEDMLLPRSNFTFSEYDSNFNVVQKQVFRIPDHLMIHDWAFTDTHYIVFANRIKLDVLGSMAAVYGMSPMISALRVNPSKSTSPIYLIPRFPGKNNGKERDWRVPVEAPSQLWLLHVGNAFEVRHPHGNLDIKIQAAACSYQWFNFSKLFGYDWQKKKLDPSIMNVKGGSKLLPHLVQVSIKLDSDYNCQECDVKPMKKWKKSSDFPATNPTFSGKKNKYLYAATTLGSRKTLPCFPFDTVVKLDLETTESVAQTWTAGSRRFIGEPIFVPKGYQEDDGYLLVVEYAVSMNRCYLVILDPKRIGADNALVARIEIPSHLNFPLGFHGFWAAN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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