SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13790 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 15 | chr5:4449128-4450802 REVERSE LENGTH=268 | SoyBase | E_val: 2.00E-74 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit dehiscence | SoyBase | N/A | ISS |
| GO:0010262 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic embryogenesis | SoyBase | N/A | ISS |
| GO:0045487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellin catabolic process | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048577 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of short-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0060862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of floral organ abscission | SoyBase | N/A | ISS |
| GO:0060867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit abscission | SoyBase | N/A | ISS |
| GO:0071365 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to auxin stimulus | SoyBase | N/A | ISS |
| GO:2000692 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| PF01486 | PFAM | K-box region | JGI | ISS | |
| UniRef100_Q67BK3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: AGL15 n=2 Tax=Glycine max RepID=Q67BK3_SOYBN | SoyBase | E_val: 3.00E-160 | ISS |
| UniRef100_Q67BK3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AGL15 n=2 Tax=Glycine max RepID=Q67BK3_SOYBN | SoyBase | E_val: 3.00E-160 | ISS |
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Glyma11g16105 not represented in the dataset |
Glyma11g16105 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U018000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g16105.1 sequence type=CDS gene model=Glyma11g16105 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCGAGGGAAAATCGAGATCAAAAGAATCGACAATGCTAGCAGCAGACAAGTCACGTTCTCGAAGCGGAGAACAGGGTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGTGACGCCGAGGTTGCTGTCATAGTTTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTGCTGTAGCAGAAATTATGACACAGAAGGAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGAAAAGCTAGAAACAAAGCAATTACAGTTGGTGGGTAAGGATCTGACAGGATTGGGTTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAGGGGTTATTGTCTGTCAAGGCGAGAAAGGAGGAATTACTCATGGAGCAACTAGAGCAATCTAGAGTTCAGGAACAGCGGGTTATGTTGGAGAATGAAACTTTGCGAAGACAGATTGAGGAGCTTCGGTGTCTGTTTCCACAATCAGAAAGCATGGTCCCATTCCAATACCAACATACTGAAAGAAAGAATACTTTTGTAAATACTGGCGCCAGATGTCTCAACTTGGCTAATAACTGTGGAAATGAGAAAGGGAGTTCAGATACAGCATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGCCCCCAAGAAAGAAACCTTTTCAAATGA
>Glyma11g16105.1 sequence type=predicted peptide gene model=Glyma11g16105 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSTDAAVAEIMTQKEDSKMVEILREEIEKLETKQLQLVGKDLTGLGLKELQNLEQQLNEGLLSVKARKEELLMEQLEQSRVQEQRVMLENETLRRQIEELRCLFPQSESMVPFQYQHTERKNTFVNTGARCLNLANNCGNEKGSSDTAFHLGLPAGVQEEGPQERNLFK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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