Glyma11g16050 - SoyBase

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Report for Sequence Feature Glyma11g16050

Feature Type:	gene_model
Chromosome:	Gm11
Start:	11720862
stop:	11722851
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g16050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16770	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr2:7279859-7280817 FORWARD LENGTH=249	SoyBase	E_val: 1.00E-48	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0071294	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to zinc ion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF07716	PFAM	Basic region leucine zipper	JGI		ISS
UniRef100_D6MKB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor (Fragment) n=1 Tax=Lycoris longituba RepID=D6MKB2_9ASPA	SoyBase	E_val: 5.00E-51	ISS
UniRef100_I1LKF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKF3_SOYBN	SoyBase	E_val: 1.00E-180	ISS

Expression Patterns of Glyma11g16050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g16050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U018600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g16050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g16050

Limit To All Plant Sequences

>Glyma11g16050.6   sequence type=transcript   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGACCACTCTCACTGCTCATGTCAATGGAAGAACAGTTCCACATTTTGTATCATAGAGTACTTTGACTTACTCTTTACACAGAAATTAAGGCCAAAGAACAATCTCGAGCAACAAACTTCCATTATGCTCATCTCATCCATTACCATGGGCTAAAAGCTAGCAAGTAGAAACCATCATGTTTCTGGTGCCACCAAGGGCCAGATACACTTTTTTTTCTGTTGAGAGATTGCAGCTGAATTTCATTGGGGGGTGCAGAAAGAAAACATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAGTTTAGCCAGACAAAAATGTCTTTCTTGTGAGTTTCTATCCAATTGCTATCACAGATGATTTGTTTGTTTAGCATTTGTAGTTGATAGGTAAGATGAGGTACATAAAAATATAATCACTGTTACCCTAAAAGGTATGTATGTAAGGACCAGCCCAATAGAAAGTGAGACCTAAAGCAAAAAAAAATTGAGAGAGACTTTATCTATGTTAAAGAAAAGAGTGATATGTGTGACCTTTTATTCAACATGTGTGGTCTTTTTTATTTTAAAAAACTAATAACAAATGTTAGGCCTAAAGCTCAAGCTTTACTTGTTTTACCCTTGGGCCGGCCCTATGTTAGATGATTCATAACTTACTCATGAAGTTTGCAATCTGCAATCTATAGGATATGTATACATAGACAAAGTAACAAAGTTCCTTGTGTAATAAGTTTGTCATGATAAAGAAATTAATACTTTTCTCCAGCT

>Glyma11g16050.7   sequence type=transcript   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCAACATTAAAAAAGTTTTTCCTTTATGCTCAATTCTGTATTATTGGGAAGACAATCCAACTGATACACTTTTTTTTCTGTTGAGAGATTGCAGCTGAATTTCATTGGGGGGTGCAGAAAGAAAACATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAGTTTAGCCAGACAAAAATGTCTTTCTTGTGAGTTTCTATCCAATTGCTATCACAGATGATTTGTTTGTTTAGCATTTGTAGTTGATAGGTAAGATGAGGTACATAAAAATATAATCACTGTTACCCTAAAAGGTATGTATGTAAGGACCAGCCCAATAGAAAGTGAGACCTAAAGCAAAAAAAAATTGAGAGAGACTTTATCTATGTTAAAGAAAAGAGTGATATGTGTGACCTTTTATTCAACATGTGTGGTCTTTTTTATTTTAAAAAACTAATAACAAATGTTAGGCCTAAAGCTCAAGCTTTACTTGTTTTACCCTTGGGCCGGCCCTATGTTAGATGATTCATAACTTACTCATGAAGTTTGCAATCTGCAATCTATAGGATATGTATACATAGACAAAGTAACAAAGTTCCTTGTGTAATAAGTTTGTCATGATAAAGAAATTAATACTTTTCTCC

Coding sequences of Glyma11g16050

Limit To All Plant Sequences

>Glyma11g16050.5   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

>Glyma11g16050.6   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

>Glyma11g16050.7   sequence type=CDS   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAGATAATAATGTTCTATTTTTGAATCCAGAGTCATGTAGCAGTTTTCAGGCTTCAAGTAGCAGCAGAACATGCACACACACTCACACTTGCAATCCACCTGGCCCTGATGCTGCTCATACACACACATGCTATCACACACACACCCAAGTTTTTGCACCAGAAGATGATGGCAGGAAGCACTCAAACTCCAAGCAAAAAAGGCCTTCTGGAAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCATATGGTGAATCAACAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTAGCAAGGTTGAGGAGCATTTTGGCACGACTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTGGCCCTTTCAAAAACAATATTGTAACACTTCTTACATTTTCAAAGAAGGGGATGCTGGTCTTGAGTGTCAGAAGAACAATTTGCCATGCTTCCATCCACATGTAGGATCATCATCCCAGGTCAACATTTGTGCATGTGGAAAATCCATGATTCCATTGGATGGAAACTGCCAACCTGAAATGGTAGATTGCCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGATAACATCATGTCATCTGCATCTCAAGACGGATAG

Predicted protein sequences of Glyma11g16050

Limit To All Plant Sequences

>Glyma11g16050.5   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*

>Glyma11g16050.6   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*

>Glyma11g16050.7   sequence type=predicted peptide   gene model=Glyma11g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGNAELSDKLSDNNVLFLNPESCSSFQASSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDGRKHSNSKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQGQALLEAELARLRSILARLKGKIDSELGAWPFQKQYCNTSYIFKEGDAGLECQKNNLPCFHPHVGSSSQVNICACGKSMIPLDGNCQPEMVDCQVDANNMTSTEGQTVDNIMSSASQDG*

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