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Report for Sequence Feature Glyma11g15761

Feature Type:gene_model
Chromosome:Gm11
Start:11423453
stop:11425703
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g15761
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28510AT Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein | chr2:12199383-12200627 REVERSE LENGTH=288 SoyBaseE_val: 6.00E-52ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF02701PFAM Dof domain, zinc finger JGI ISS
UniRef100_B9T1Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T1Y3_RICCO SoyBaseE_val: 1.00E-126ISS
UniRef100_UPI000233D573UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D573 related cluster n=1 Tax=unknown RepID=UPI000233D573 SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g15761
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g15761 not represented in the dataset
Glyma11g15761 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g15761
ParalogEvidenceComments
Glyma12g07710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g15761 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U021300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g15761
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g15761
>Glyma11g15761.1   sequence type=CDS   gene model=Glyma11g15761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCCCACCAAGAGAGAAAACCAACGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTCTGCTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGTACACTTAGGAATGTCCCTGTGGGAGGAGGGTGCAGGAAGAACAAAAGGTCATCATCATCATCTTCAACATCAAAGAGAGTTCAAGATCAAGCATTCACACCAAATGTTAACCCTCTCACTGGCCTTCCTTCATTAATGTCTTATGACTCCAATGACCTCACTCTTGCATTGGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTAGGGTATGATGATCATGATCTTTCAATGTTGGGGAACCACCACACAAACACCCCATGTGGTGATAATATCCTTGGCATGCATCACCACTCATCATCCTCATCCACAAACCCAGGGTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACACAAAGTAATAATAATATGCATCAGAATATGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGTGGTGGGGTTGGGGTTAGTAGTAGTGGAGAGATGATGATGATGATGATGCCTTATAATAATGATCAAGAAATGAGTATTGCATCCACACAGGCAGTGACAGTCACCACCATGAAGCAAGAGATTTGCAACGGAAGGGAACAAAAGGTGTTGTGGGGTTTTCCATGGCAACTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTAATTGGAATGGCATCAATTCATCATGGCATGGACTTCTCAACAGTCCCCTAATGTAG
Predicted protein sequences of Glyma11g15761
>Glyma11g15761.1   sequence type=predicted peptide   gene model=Glyma11g15761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSSGQHQQMSSQSLENMLACSKAHQERKPTPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSTSKRVQDQAFTPNVNPLTGLPSLMSYDSNDLTLALARLQKQSCGQLGYDDHDLSMLGNHHTNTPCGDNILGMHHHSSSSSTNPGFLDALRSGFLGTQSNNNMHQNMYYGYGNGDMGEVDNGGGVGVSSSGEMMMMMMPYNNDQEMSIASTQAVTVTTMKQEICNGREQKVLWGFPWQLNGDTNMGELDSGRASNWNGINSSWHGLLNSPLM*






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