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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07630 | AT | Annotation by Michelle Graham. TAIR10: arogenate dehydratase 2 | chr3:2435457-2437530 FORWARD LENGTH=381 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-phenylalanine biosynthetic process | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004664 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prephenate dehydratase activity | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| GO:0047769 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: arogenate dehydratase activity | SoyBase | N/A | ISS |
| KOG2797 | KOG | Prephenate dehydratase | JGI | ISS | |
| PTHR21022 | Panther | PREPHENATE DEHYDRATASE (P PROTEIN) | JGI | ISS | |
| PF00800 | PFAM | Prephenate dehydratase | JGI | ISS | |
| PF01842 | PFAM | ACT domain | JGI | ISS | |
| UniRef100_G7JRH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arogenate/prephenate dehydratase n=1 Tax=Medicago truncatula RepID=G7JRH8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LKB8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKB8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g15750 not represented in the dataset |
Glyma11g15750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g07720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U021400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g15750.3 sequence type=transcript gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCATAGTGTGTGGGGAAAGAAAGTCTCCGAATTGGGTTAATAAAAGGTAAAAACAAACTACAAACTAAACGTACTTCGCACTCTGCAAAACCCAAACACTGTCTCCGTCTGGATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGCCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGCAACCAACCTCTACGAGCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGAGCAGAGTGCACAGAATGCCCTGAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCTTGACGTAAATAATCTTCAAAAGTGGACTCCCGAATATAATTACTGTTGTGCGCAGCATAGCCCTTCTGGTTGTCAAATCGTGTTAATGGAAATAGAGTTTACATTGCTTCAATACAAGAAATATACAGAAAATCGTATCAAATGTAAAAGCTTCTTAAAATTTTGATGGGCCTCCCCGGCCCTTAAATTTATGTTCTCTCAAGCAGCATACAATGAATCGACTGCTTATTATTATTATTATTAGGCTTAAATATGTTTTTCATACTTGAAAAATAAATCGTTTTTAGATTATTACCTGAAAGTCACTTTTGGTTGATTACGTATCCAAAAAAAAATTATATGTTTTAACGTAGTATTTGTCACTAGTCTTATCTTGAT >Glyma11g15750.4 sequence type=transcript gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCATAGTGTGTGGGGAAAGAAAGTCTCCGAATTGGGTTAATAAAAGGTAAAAACAAACTACAAACTAAACGTACTTCGCACTCTGCAAAACCCAAACACTGTCTCCGTCTGGATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGCATGTTGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCCGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGCCAGATTAACCTTACAAAGGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGAGCAGAGTGCACAGAATGCCCTGAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCTTGACGTAAATAATCTTCAAAAGTGGACTCCCGAATATAATTACTGTTGTGCGCAGCATAGCCCTTCTGGTTGTCAAATCGTGTTAATGGAAATAGAGTTTACATTGCTTCAATACAAGAAATATACAGAAAATCGTATCAAATGTAAAAGCTTCTTAAAATTTTGATGGGCCTCCCCGGCCCTTAAATTTATGTTCTCTCAAGCAGCATACAATGAATCGACTGCTTATTATTATTATTATTAGGCTTAAATATGTTTTTCATACTTGAAAAATAAATCGTTTTTAGATTATTACCTGAAAGTCACTTTTGGTTGATTACGTATCCAAAAAAAAATTATATGTTTTAACGTAGTATTTGTCACTAGTCTTATCTTGAT
>Glyma11g15750.2 sequence type=CDS gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGCATGTTGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCCGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGCCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGCAACCAACCTCTACGAGCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGAGCAGAGTGCACAGAATGCCCTGAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCTTGACGTAA >Glyma11g15750.3 sequence type=CDS gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGCCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGCAACCAACCTCTACGAGCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGAGCAGAGTGCACAGAATGCCCTGAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCTTGACGTAA >Glyma11g15750.4 sequence type=CDS gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGCATGTTGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCCGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGCCAGATTAACCTTACAAAGGTACTTTGA
>Glyma11g15750.2 sequence type=predicted peptide gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASRIVAHPPPYPHRQSPPSDAPPSLNLTLNPKRYRNLGIRASLRGHEEKNKNDLADKPHSVELRATSTPDDVVSRDLLSLPRPLSSTQLSASVSDSSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVRHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAYHKLQDAGAVASSAAAKIYGLNILDQDIQDDSDNVTRFLMLAREPMIPGTDRRFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRADDSNNSKYFDYLFYVDFEASMAEQSAQNALRHLKEFATFLRVLGSYPVDTSLT* >Glyma11g15750.3 sequence type=predicted peptide gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASRIVAHPPPYPHRQSPPSDAPPSLNLTLNPKRYRNLGIRASLRGHEEKNKNDLADKPHSVELRATSTPDDVVSRDLLSLPRPLSSTQLSASVSDSSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVRHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKDDSDNVTRFLMLAREPMIPGTDRRFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRADDSNNSKYFDYLFYVDFEASMAEQSAQNALRHLKEFATFLRVLGSYPVDTSLT* >Glyma11g15750.4 sequence type=predicted peptide gene model=Glyma11g15750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASRIVAHPPPYPHRQSPPSDAPPSLNLTLNPKRYRNLGIRASLRGHEEKNKNDLADKPHSVELRATSTPDDVVSRDLLSLPRPLSSTQLSASVSDSSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVRHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAYHKLQDAGAVASSAAAKIYGLNILDQDIQDDSDNVTRFLMLAREPMIPGTDRRFKTSIVFSLEEGPGILFKALAVFALRQINLTKVL*
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