Glyma11g15504 - SoyBase

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Report for Sequence Feature Glyma11g15504

Feature Type:	gene_model
Chromosome:	Gm11
Start:	11139611
stop:	11142833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g15504

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59990	AT	Annotation by Michelle Graham. TAIR10: CCT motif family protein \| chr5:24151206-24153084 REVERSE LENGTH=241	SoyBase	E_val: 1.00E-32	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7JSL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=1 Tax=Medicago truncatula RepID=G7JSL7_MEDTR	SoyBase	E_val: 8.00E-84	ISS
UniRef100_I1M624	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M624_SOYBN	SoyBase	E_val: 7.00E-85	ISS

Expression Patterns of Glyma11g15504

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g15504 not represented in the dataset	Glyma11g15504 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g15504

Paralog	Evidence	Comments
Glyma12g07926	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g15504 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U033700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g15504

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g15504

Limit To All Plant Sequences

>Glyma11g15504.2   sequence type=transcript   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTACACTCTCTCAAGAGAGGGGGAAAAAAAAAAGAAGAAAAGAAAAGAGTTTCTTTCGAATCCATTGGCTTTTTGGGTTTTGTTTTGTTCCGCATCTCCCCCACACTGAAAAATATTAAATACTAACCCCCTCCCTCTCTTCACATGCATAATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGGTTAACTAGCTAGCTAGTACCCTCATTACTGTAACGTCTAGGAGAGGAAAGAAACAATATGCTTGCAGAAAGACTTTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGATGAAACTGCTAAGAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGATGAAGAGGAAGAGAATTGGGCTGATTTCTTTGATTCCTTAGTTCCTGCAAATATTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAAAATAATTGCATCCTTAAATCAGCATGGCTAGATAATTAAGTTGTTTGTTTTTCCATGTTTTTTTTTTTTAAGTTTTGAAGTTGGTAATGTAAATATATATCTATATATATATATAGGTACTTACTTGAATCATGGATGTGACCATGTGCAGTTTTAGACTTCAATCTGGGGTGAAGTTTTTAGTGCCCTTTTATGGTTTTATAGACTAGGCCTCAGTAGCAGCAGCAGCATTGTATTGTTTGGACAAAAAAGCTTTTGCAAGTTGTACTTGGGGTTTATTTCCTATATGATGTATTTATATATTTTATACCATA

Coding sequences of Glyma11g15504

Limit To All Plant Sequences

>Glyma11g15504.1   sequence type=CDS   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCTTGCAGAAAGACTTTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGATGAAACTGCTAAGAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGATGAAGAGGAAGAGAATTGGGCTGATTTCTTTGATTCCTTAGTTCCTGCAAATATTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAA

>Glyma11g15504.2   sequence type=CDS   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGGTTAACTAG

Predicted protein sequences of Glyma11g15504

Limit To All Plant Sequences

>Glyma11g15504.1   sequence type=predicted peptide   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSFFLFLNLSTKLTSSRSTFPRAMYTHRNASLSRAAADSLGHFLSPPDASTASPMQYSAAAHHQLGLGEFDNSVHELNYSEMSSSNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGRAHHQPFSEFSPLFVEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNFGKKIKYACRKTLADSRPRIRGRFARNDETAKNPPAQWSHMGNGEEEDEEEENWADFFDSLVPANIAQEPQGSSSSFGVFY*

>Glyma11g15504.2   sequence type=predicted peptide   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSFFLFLNLSTKLTSSRSTFPRAMYTHRNASLSRAAADSLGHFLSPPDASTASPMQYSAAAHHQLGLGEFDNSVHELNYSEMSSSNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGRAHHQPFSEFSPLFVEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNFGKKIKVN*

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