SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G59950 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140235-24141504 FORWARD LENGTH=245 | SoyBase | E_val: 2.00E-77 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG0533 | KOG | RRM motif-containing protein | JGI | ISS | |
| PTHR19965 | Panther | RNA AND EXPORT FACTOR BINDING PROTEIN | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9SZF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA and export factor binding protein, putative n=1 Tax=Ricinus communis RepID=B9SZF6_RICCO | SoyBase | E_val: 8.00E-100 | ISS |
| UniRef100_I1LK48 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LK48_SOYBN | SoyBase | E_val: 2.00E-175 | ISS |
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Glyma11g15040 not represented in the dataset |
Glyma11g15040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g07010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g141500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g15040.4 sequence type=transcript gene model=Glyma11g15040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGAAAAATGACCTTATCTGGTTAGTTTGATATTACCTTTACCTTATCTGCCTCAAGATCAGATGGAGAGAAAGTTTAAAAATTCTAAAGACCCAATCTCAATACCTCAAACTCTAAACACTGCATATTTAATTATCATACCACCACCCACCCTTCTCCCATCCCTCACTCTCTCGACGAAACCCTAAGCTTCCCCTTTCAATCTCATCAGATCCTTTCGTGGTTGCGCGAAACCCTAATTTTGAATCTGCAAACATGTCTGCAGCTATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGTTCCCGTGGCCGGATCCGACCCTCCGGTTCCGGACCTTCTCGCCGGTTCCCCAACCGTGCCGCCAACCGCGCCGCTCCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCAAGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAGTGACGATATTAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAGTTGGATGGGAAACCAATGAAGATTGAGATTGTGGGAACCAACATTTCCACACCTGGTGTGGCTCCTGCTCGTAACGGGGCTATTGGAAATTTTGATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAGGGCGTTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGCGGAGCAGGTCGCGGTGAAAAGGTATCTGCTGATGATCTTGATGCGGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGAAGGAATTGGCCATATTTTATTTTCTTGCTATTACATCTATGATGTTTATTAGGGACTTGGTGCTGGAACACCATGTGTTTATGTATCTTTCACGCTGGCCTACTTTTTAGGGAAAGAGAATGGATTTCCTGAGTGAAAACATTTAGACTTGCCATATGGAGTTTGGGCTTCTGTTGTCTATTTTTGATTTTCCTTGGGTATGAAATATGGATTACGAAACAGAAGTCAGCATGTAATATGCAGTCAAGCTTGCCTTCACTGGCATTAATTTGTTTTAACGAGTGGATTATGGAAGTGGGAACCATGATTTCATCTATCAATGTACAAAGAAATGTTTGGCTGCCAAATGTGGGAGGCTACAGAATTCACCCACAGCTGCTTTGTTGTTTTGGTTAAACCATATACCCAACACAGTGGAATCTTCAAATAAAGGTAGATTCCCTGCCTCTTCTTTTAACACCCTCATCCCCAGAAAAGAGTCATGTGATCTCTTTTGTTTTTATTATATTATATGACCTTGCCCTGTGCTATACTTGTTTGATATATCATGAGATGTTGGTACTTGTTTTGGGTGTGAACATCTTCCTGACTTTCTGGTAATTTTGGCTTATTATCTAGTGAGATGGAATCTATCATCTGTTCTATTTGACTTCAGCGGCCGATTGCACTGGTCAAGATACACGTCTACAGATGAAGATTGCACTCCTGGCTAAGGATGCTATAGGAGTTAGTATTTATTTTACATTTGCTGGTCATGCTCATTCAGGTCCAGTTGTCTGTGCTGTGTCGTGTATTTTACACCCGCTGTAACCCAGTTTTCCTTGTACTGAATCTGTGAGAAATGTCCTTGCGGGTTAAAGCTGGTCCATTCTTTGATGCCATATTTTTACTTGTTGGAACCAAGAGGGACAGCTGATAGAAGTGCTTGCTATAAGTCAGTGTCTGTTCTAGTTAACAGGCGTTGGTGAAACATGATACACATGCCTCCCTAGCTGTGGGAAAGAAAATGGTATTGTTAACTTCCTTTGAATCTAGCAACGTTTTTTTCCTTCAGTATGAGTTTTTTAGGGTAGCAGTCCGAGAGCCTAAGAATATTATGTCACTGGGGCAACTGGGCATTAATCCATCACGTAATACAATATGCTCAGCTTGTTCTGTTTAACGTAGGTTGAAGTATAACTGGATTGAATGGTGGTTCGACAGCTGACCTATAACTGACTAGTGTTTGGATTGTGATGACCCTTGCGTGTTTTAAACTTTTAGAAACTGTGCTGTGG
>Glyma11g15040.3 sequence type=CDS gene model=Glyma11g15040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGCAGCTATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGTTCCCGTGGCCGGATCCGACCCTCCGGTTCCGGACCTTCTCGCCGGTTCCCCAACCGTGCCGCCAACCGCGCCGCTCCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCAAGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAGTGACGATATTAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAGTTGGATGGGAAACCAATGAAGATTGAGATTGTGGGAACCAACATTTCCACACCTGGTGTGGCTCCTGCTCGTAACGGGGCTATTGGAAATTTTGATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAGGGCGTTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGCGGAGCAGGTCGCGGTGAAAAGGTATCTGCTGATGATCTTGATGCGGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA >Glyma11g15040.4 sequence type=CDS gene model=Glyma11g15040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGCAGCTATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGTTCCCGTGGCCGGATCCGACCCTCCGGTTCCGGACCTTCTCGCCGGTTCCCCAACCGTGCCGCCAACCGCGCCGCTCCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCAAGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAGTGACGATATTAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAGTTGGATGGGAAACCAATGAAGATTGAGATTGTGGGAACCAACATTTCCACACCTGGTGTGGCTCCTGCTCGTAACGGGGCTATTGGAAATTTTGATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAGGGCGTTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGCGGAGCAGGTCGCGGTGAAAAGGTATCTGCTGATGATCTTGATGCGGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA
>Glyma11g15040.3 sequence type=predicted peptide gene model=Glyma11g15040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRRFPNRAANRAAPYATAKAPEATWQHDLYADQQVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPARNGAIGNFDGVPRSGQGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN* >Glyma11g15040.4 sequence type=predicted peptide gene model=Glyma11g15040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRRFPNRAANRAAPYATAKAPEATWQHDLYADQQVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPARNGAIGNFDGVPRSGQGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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