SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12580 | AT | Annotation by Michelle Graham. TAIR10: heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0031625 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding | SoyBase | N/A | ISS |
| KOG0100 | KOG | Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily | JGI | ISS | |
| PTHR19375 | Panther | HEAT SHOCK PROTEIN 70KDA | JGI | ISS | |
| PF00012 | PFAM | Hsp70 protein | JGI | ISS | |
| UniRef100_Q5QHT4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 70 kDa heat shock cognate protein 1 n=1 Tax=Vigna radiata RepID=Q5QHT4_VIGRA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D277 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D277 related cluster n=1 Tax=unknown RepID=UPI000189D277 | SoyBase | E_val: 0 | ISS |
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Glyma11g14950 not represented in the dataset |
Glyma11g14950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g06910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g140500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g14950.1 sequence type=CDS gene model=Glyma11g14950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGAAAAGGCGAGGGTCCTGCTATCGGAATCGATTTGGGAACGACGTACTCTTGCGTCGGCGTGTGGCAACACGATCGTGTTGAAATCATAGCCAACGATCAGGGTAACAGAACTACCCCATCCTACGTGGCTTTCACCGACACAGAACGGTTGATCGGCGATGCGGCGAAGAACCAGGTCGCTATGAACCCAACCAACACCGTTTTTGATGCTAAGCGTTTGATTGGAAGGCGTTTTTCCGATGCATCAGTACAAGGTGACATGAAATTGTGGCCGTTCAAGGTGATTCCTGGCCCTGCTGAGAAACCTATGATTGTGGTGAACTACAAGGGGGAGGAGAAACAGTTTTCCGCGGAAGAGATATCCTCCATGGTTCTTATGAAGATGAAGGAGATTGCGGAGGCGTATCTAGGTTCCACCATAAAGAATGCGGTTGTCACTGTGCCTGCTTACTTCAACGACTCACAACGTCAAGCCACCAAGGACGCTGGTGTCATTTCTGGGCTCAACGTGATGCGAATTATCAACGAGCCTACCGCGGCTGCCATTGCTTATGGGCTCGACAAAAAGGCCACTAGCTCTGGGGAGAAGAATGTTCTCATTTTTGATCTCGGTGGTGGGACTTTTGATGTCTCTCTTCTCACCATCGAGGAGGGTATTTTCGAGGTGAAGGCCACTGCTGGTGATACTCACTTGGGAGGTGAAGATTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAATTCAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCCAGAGCTCTGAGGAGGTTGAGAACAGCATGTGAGCGGGCAAAGAGGACTCTCTCTTCCACTGCTCAAACCACCATAGAGATTGATTCCTTGTACGAGGGTATTGACTTCTACACAACCATTACCCGTGCCCGTTTTGAAGAGCTAAACATGGATTTATTCAGGAAGTGCATGGAGCCCGTGGAGAAGTGTTTGCGGGATGCCAAGATGGATAAGAGTACCGTCCATGATGTTGTTCTTGTTGGTGGTTCTACTAGGATTCCCAAGGTTCAACAGTTGTTGCAGGACTTCTTCAACGGAAAGGAACTTTGCAAGAGTATTAACCCAGATGAAGCTGTTGCTTATGGTGCTGCAGTGCAGGCTGCGATTCTCAGTGGCGAGGGTAATGAGAAAGTGCAGGATCTTCTTTTGTTGGATGTTACTCCTCTATCCACTGGTTTGGAGACTGCAGGAGGAGTCATGACTGTGTTGATTCCCAGAAACACAACCATTCCCACCAAGAAGGAGCAGGTGTTCTCAACCTACTCTGACAACCAGCCCGGTGTGTTGATTCAGGTCTATGAAGGTGAACGAACGAGGACTCGTGACAACAATTTGCTTGGCAAATTTGAGTTATCTGGAATTCCTCCTGCTCCCAGAGGTGTTCCTCAGATCACTGTTTGCTTCGACATTGATGCCAACGGTATATTGAACGTGTCTGCGGAGGACAAAACCACTGGACAGAAGAACAAGATTACAATTACCAACGACAAGGGCAGGCTTTCTAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAATACAAGTCTGAGGACGAGGAGCATAAGAAGAAAGTGGAGGCCAAAAATGCATTGGAAAATTATGCCTATAACATGAGGAACACAATCAAGGATGACAAGATTGCTTCCAAACTGTCTTCTGATGATAAGAAGAAAATTGAAGATGCGATTGAGCAGGCTATCCAATGGCTAGATGGAAACCAACTTGCTGAGGCTGACGAATTTGAGGATAAGATGAAGGAGTTGGAGAGCATTTGTAATCCCATCATAGCAAAGATGTACCAGGGTGCTGGTGGTGATGCGGGTGGAGCCATGGATGAGGATGGTCCTGCAGCTGGCAGTGGAAGCGGTGCTGGACCCAAAATTGAGGAAGTCGATTAA
>Glyma11g14950.1 sequence type=predicted peptide gene model=Glyma11g14950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIPGPAEKPMIVVNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSTGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSSDDKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGDAGGAMDEDGPAAGSGSGAGPKIEEVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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