Glyma11g14840 - SoyBase

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Report for Sequence Feature Glyma11g14840

Feature Type:	gene_model
Chromosome:	Gm11
Start:	10595937
stop:	10599522
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g14840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07630	AT	Annotation by Michelle Graham. TAIR10: pol-like 5 \| chr1:2349189-2351437 FORWARD LENGTH=662	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF168	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9T788	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9T788_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D2EB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D2EB related cluster n=1 Tax=unknown RepID=UPI000233D2EB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g14840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g14840

Paralog	Evidence	Comments
Glyma12g06790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g14840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g139500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g14840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g14840

Limit To All Plant Sequences

>Glyma11g14840.1   sequence type=CDS   gene model=Glyma11g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACGGCATAGGGAAGCTAACGGTGTGCTTCACCGGAAACGGAGGAGGGGGTCGTCGAAAGCAGGATATATCTATTTTAATAACGGAGCCGTTAGACGAGGGTTTGGGTCACTCTTTCTGCTATGTTAGACCCGACCCGACCCGGATTTCTTCGTCGAAGGTCCACTCGGAGGAAACGACGACGTTCAGAACAATCTCGGGCGCGTCGGTGAGCGCAAACACGTCGACGCCGTTATCGACGGCGTTTGTGGATTTGTACTCGTACGGTTGCATCGACAGAGCCGCGGCGTTTGAGAGTTCAACGTCGTTCGCGGCGTTACCACTTCAGCCGATTCCGAGGACCCTCGTGAACTCGGGCCCGTTCTCGGGGAACCTGAACGGCGGTGGGTTTCCCGGCTCGGGCCCACTGGAGAGAGGGTTCATGTCGGGCCCAATCGAGCGCGGGTTCATGTCCGGGCCCATCGATCGCGGGCTTTTTTCGGGCCCGATTGAGAGGGAAGGGAACGGAATCGGAAACGGATCGGATCATTTTCAGAGAAGCTTCTCGCACGGAGGGTTGGGTTTGGGGTTGGGTATGAGAGTGGGAACGAGGAAGGGTAAGTGGATTCGCGTTTTGCAGAGGGCTATTTCCAAGACTCTGTCTCGGGGGCACAATTCAATTGTGGCTCCGATCAAGGGCGTGGTGGTGAAGGAGCCGGAGTGGATGGTGGCAGCGGCGGCGGCAGCGGCGGAGAAGCATAACGAGAATCTGAGCGTGAATTTGAGTAGCGAGGGGAGTTTGGAGGACTATGATTCGATGGAGAGTCAGAATCTTCAATGGGCGCAGGGGAAAGCAGGGGAGGATCGTGTTCATGTTGTGGTGTCTGAGGAACACGGTTGGGTTTTCGTGGGGATCTATGATGGTTTCAGTGGACCTGATGCACCTGATTACCTTCTCTCCAATCTCTACACCGCGGTGCATAAGGAGCTTAAAGGGTTGTTGTGGGATGACGGGTCTGCACCGGAAAATTCAACGATAAAAGAGGACATGTTGCGAGATGTTACTGCAGATGTTACGGTTACTGATGAAGATGATGCTTGTTCTCACTGTGTTGAGCAAGATAATAATGATAATAATAGAAAGAGCAGTAATAAGAGAGGTAGGAATTCGAGGAATAAGTTCAAGGGTGCTGCGAAGAAATGGGAGGAGAATCAACGGAGGTGGAAGTGTGAGTGGGATAGGGAAAGATTGGAGCTTGATCGGAGATTGAAGGAGCAACTGAATTTAAGTCGATCTGGGTCGGGTGGAGCAGCGAGTTCAATTAATCATTCAGATGTTTTGGAGGCTCTTTCTCGGGCTTTAAAGAAGACTGAGGAGTCTTATCTCGATGTGGCGGATAAGATGGTGATGGAGAATCCTGAATTGGCTTTGATGGGTTCGTGTGTTCTTGTGATGTTGATGAAGGGGGAGGATGTTTATGTGATGAATGTAGGGGATAGTCGAGCTGTGCTGGCTCAGAAGGCTGAGCCTGATTACTGGCTTGGCAAGATCAGGCAGGACTTGGAGAGGATCAATGAGGAGACGATGAATGATCTTGAGTCTTGGGATGTTGATACGTCCAACTTGGTACCGAGTTTGAGCGCGATTCAGCTTACCAAGGATCATAGTACTAGTGTTGAGGAAGAAATCCAGAGAATTAAAAAAGAGCACCCGGATGATCCTTTTGCTGTTGTAAATGACCGTGTGAAGGGTTCTCTCAAAGTTACTCGAGCATTTGGTGCCGGATTTCTCAAACAGCCAAAGTGGAACAACGCACTTCTGGAGATGTTTAGAATAGACTACGTAGGAAACTCTCCTTACATAAGCTGCCTACCATATCTAAAACACCACAGATTAGGCCCAAAGGACAAATTTTTGATTCTATGCTCTGATGGGCTCTATCAGTACTTGTCAAACGAAGAGGCAGTGGCTGAAGTCGAGCTTTTCATCACATTGCAACCCGAGGGAGACCCGGCTCAGCATTTGGTTGAAGAAGTGTTGTTTCGTGCTGCAAAGAAAGCTGGTTTGGACTTTCACGAGTTGCTCGAAATTCCACAGGGTGATAGGCGCCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAGGGAAGGATATGGAGATTCTGTGTATAA

Predicted protein sequences of Glyma11g14840

Limit To All Plant Sequences

>Glyma11g14840.1   sequence type=predicted peptide   gene model=Glyma11g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNGIGKLTVCFTGNGGGGRRKQDISILITEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTAFVDLYSYGCIDRAAAFESSTSFAALPLQPIPRTLVNSGPFSGNLNGGGFPGSGPLERGFMSGPIERGFMSGPIDRGLFSGPIEREGNGIGNGSDHFQRSFSHGGLGLGLGMRVGTRKGKWIRVLQRAISKTLSRGHNSIVAPIKGVVVKEPEWMVAAAAAAAEKHNENLSVNLSSEGSLEDYDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFSGPDAPDYLLSNLYTAVHKELKGLLWDDGSAPENSTIKEDMLRDVTADVTVTDEDDACSHCVEQDNNDNNRKSSNKRGRNSRNKFKGAAKKWEENQRRWKCEWDRERLELDRRLKEQLNLSRSGSGGAASSINHSDVLEALSRALKKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDTSNLVPSLSAIQLTKDHSTSVEEEIQRIKKEHPDDPFAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYISCLPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRFCV*

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