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Report for Sequence Feature Glyma11g14780

Feature Type:gene_model
Chromosome:Gm11
Start:10537077
stop:10540267
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g14780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59410AT Annotation by Michelle Graham. TAIR10: Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130 SoyBaseE_val: 1.00E-71ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3415 KOG Putative Rab5-interacting protein JGI ISS
PTHR12906Panther PROTEIN C20ORF24 (RAB5-INTERACTING PROTEIN) JGI ISS
PF07019PFAM Rab5-interacting protein (Rab5ip) JGI ISS
UniRef100_I1LK18UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LK18_SOYBN SoyBaseE_val: 3.00E-85ISS
UniRef100_Q9LTI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF17201.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LTI8_ARATH SoyBaseE_val: 9.00E-61ISS

Expression Patterns of Glyma11g14780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g14780 not represented in the dataset
Glyma11g14780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g14780
ParalogEvidenceComments
Glyma12g06700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g14780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g138900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g14780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g14780
>Glyma11g14780.1   sequence type=CDS   gene model=Glyma11g14780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAAGGTAAATCAGTTAAACTCAACCATCAACAACCGCACCAGAACGGTCACCTCTCGCCTTCAAAATTCGCCAAATTGTTTGATCCAGAAGCATCCTGGGACAAGGATCAATTGGGAGACGTATTGCATTGGATTAGACAAGTGCTCGGCCTTGCGTGTGGATTCCTTTGGGGTTCCATACCTTTGGTTGGAGGCATATGGTTTATCCTCTTTTTAGCGTTATCCACTGGAATTATATATAGTTACTATGCAGTAATACTAAAGGTTGATGAGGAAGAGTTTGGCGGTCATGGAGCCCTCCTTCAAGAGGGGCTATTTGCTTCCATAACTCTTTTCCTGCTTTCCTGGATTTTAGTTTACAGTTTAGCACACTTCTGA
Predicted protein sequences of Glyma11g14780
>Glyma11g14780.1   sequence type=predicted peptide   gene model=Glyma11g14780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEGKSVKLNHQQPHQNGHLSPSKFAKLFDPEASWDKDQLGDVLHWIRQVLGLACGFLWGSIPLVGGIWFILFLALSTGIIYSYYAVILKVDEEEFGGHGALLQEGLFASITLFLLSWILVYSLAHF*






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