SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G59550 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein | chr5:23998422-23999645 REVERSE LENGTH=407 | SoyBase | E_val: 3.00E-93 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0051865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22763 | Panther | RING ZINC FINGER PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF06547 | PFAM | Protein of unknown function (DUF1117) | JGI | ISS | |
| UniRef100_G7JCE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JCE1_MEDTR | SoyBase | E_val: 4.00E-177 | ISS |
| UniRef100_I1LJZ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJZ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g14580 not represented in the dataset |
Glyma11g14580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g06460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g137300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g14580.1 sequence type=CDS gene model=Glyma11g14580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTGGAAACGCAACCAGGAACGGCGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTGCACCTCTCTGTCCAAAGCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGTGCCGGCGCCGGAGCCGAAGCCTCGCCACGCCATCGACTAAGTCCTTTCCCCGATGATCCTCTTTTGCTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGCTTCCGGCAACCGCTCCCCGTTCAACCCCGTTATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGACCACGACGGCGTCAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGCCCTCTTCCTCCCACCATGTCGGAGTTGCTCCTCGGCTCTGGCTTTGACAGACTTCTCGAACAGTTCGCGCAGATCGAGATGAACGGATTCGGGCGGCCGGAGAATCCGCCGGCGTCAAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAAACGCACGTGGAAACCGAAGCGCACTGCGCCGTGTGCAAAGAAGCGTTTGAGCTGCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGGAATTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCCAGCCAGATCGACGAGGAGACGATAGGGTTAACGATTTGGAGGCTTCCCGGCGGCGGATTCGCCGTGGGGAGATTCTCCGGCGGCCGGAGAACAGGCGAGAGTCATTTCCCGGTGGTGTACACGGAGATGGACGGTGGACTGAACACGAACGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTATTAGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTGGACATGGGTCTGTAAGTAGAAGCCGTAGTCACGTGAGTTCAATCTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTAA
>Glyma11g14580.1 sequence type=predicted peptide gene model=Glyma11g14580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLETQPGTASYWCYSCTRFVHLSVQSTIACPHCQSGFVEEIRAGAGAEASPRHRLSPFPDDPLLLRRQGFRRRRREASGNRSPFNPVIVLRGPGDDSAAADHDGVSTFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEETIGLTIWRLPGGGFAVGRFSGGRRTGESHFPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVISNFFSFFGRIGSRNSSSGHGSVSRSRSHVSSIFNRSSRRHSRTWVMDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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