SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46780 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 16 | chr3:17228766-17231021 FORWARD LENGTH=510 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1203 | KOG | Predicted dehydrogenase | JGI | ISS | |
| PTHR14194 | Panther | NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED | JGI | ISS | |
| PTHR14194:SF18 | Panther | OS05G0291700 PROTEIN | JGI | ISS | |
| PF05368 | PFAM | NmrA-like family | JGI | ISS | |
| UniRef100_I1LJY2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJY2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9STF2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein plastid transcriptionally active 16 n=1 Tax=Arabidopsis thaliana RepID=Q9STF2_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma11g14410 not represented in the dataset |
Glyma11g14410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g06350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g135900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g14410.1 sequence type=CDS gene model=Glyma11g14410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCCACTCTTACATCCAATTCATCTTTTTTAAGCACCAGTCCTCATTCAAGGGTGAGCCTCCGGAATCCAAGGCTGAGAGTCTTTGCCAAGAAGTCTGGATCATTCCCATCATTTGGACTAGGCAAGCCCAAAGATGATTCTTCTTCTGCTGAAGAAAAAGATAACTCATCCAATTCCAACCCCTTTCGTTTGGACTTTGGAAAGATACCCGATGTAACGTCTTTGATCCCAGTTCCAAGCAACACTTCTGCGCCAGGCTTTTCTTTTGGAAACACAAGGCGCAAGGACCCTTCAACAGTGTTTGTTGCCGGCGCAACGGGGCAGGCTGGTATTCGCATTGCACAAACGTTGTTAAGGGAAGGTTTCAGTGTACGGGCTGGAGTCCCCGAACTTGGTTCTGCCCAAGAACTTGCTCGTCTCGCTACTCAATACAAGATTATATCAAATGAACAGGCAAAGCGTCTGAACGCTGTGCAATCAAGCTTTGACAATGCAGACACAATAGCCAAAGCAATAGGCAATGCCGGCAAGGTGGTTGTCACCATTGGTCCGACAGAGAATGGTCCAACCGCAGAGGTATCTTCATCAGATGCCTTGCAAGTGGTTCAGGCAGCACAGCTGGCAGGAGTAGGCCATGTGGCCATCGTCTATGACGAGAGCAGCACTGGGGCCTCAACCTACAATGTACTGGATGGCCTCTCATCCTTCTTCAACAACCTCTTCTCCAGGTCTCAACCGTTGACCATACAAGAGTTCTTGCAGAAAGTCATTGAAACGGATGTCAAGTACACCTTCATCAAGACAAGTTTGACTGATGATTTCTCACCGGAGAGTTCCTACAATGTGGTTGTCTTGGGCGAAGGAAGCGCCAGTGCAAACGACTATAAAGTAGCAAAGTCCAAGATCGCATCGTTGGTGGCTGATGTCTTCTCCAACACAGAGGTAGCAGAAAACAAGGTTGTGAAAGTGCACTCGGATCCCAGTGCCCCCTTGAAGCGTGTAGATGAACTTTTCAGCCCTATTCCTGAGGATGGAAGAAGGAAAGCCTATGCTGAAATGCAGGAAAAAACAAAGGCAGAGGAAGAAGCAAGAGTGGCAGCTGAAAAGGCCCGTGAAGCTTCTGAATCAGCAAAGAAGTTGGAAGAAGAGGTGAAAAGGCTTTCACAGCAAGAAACACGGGCTGCAAGTCTGGCTCAAGAGGCCCAAGAGAAGGCAGAGGCTGGCGGGGCTTCAGTTGAAAACCTCTTGAACAAGGCAAAAGACTTTGGTGCAGGGTTTTCCTGGGAAAAGTTGAGCTCACAGATTACTACTTCAATCCAAAAGCCTGATGAGGATGAGAAACCAAAGGTGCAGCTAGCCACTGTAAGGGGACAGGCCAAGGCTCGGAATCTCGCGCCTAACAAAGCAGTGGTCAAACAAACACCTCAGAGAAGTGCAGCTAAACCAAAGGTGGAAAAACCAAAGCAGACAGAGACACCAAAGGAGGTGAGGAAAGTATTTGGTGGCCTGTTCAAGCAAGAGACTATCTATGTTGATGATGACTAG
>Glyma11g14410.1 sequence type=predicted peptide gene model=Glyma11g14410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPTLTSNSSFLSTSPHSRVSLRNPRLRVFAKKSGSFPSFGLGKPKDDSSSAEEKDNSSNSNPFRLDFGKIPDVTSLIPVPSNTSAPGFSFGNTRRKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELGSAQELARLATQYKIISNEQAKRLNAVQSSFDNADTIAKAIGNAGKVVVTIGPTENGPTAEVSSSDALQVVQAAQLAGVGHVAIVYDESSTGASTYNVLDGLSSFFNNLFSRSQPLTIQEFLQKVIETDVKYTFIKTSLTDDFSPESSYNVVVLGEGSASANDYKVAKSKIASLVADVFSNTEVAENKVVKVHSDPSAPLKRVDELFSPIPEDGRRKAYAEMQEKTKAEEEARVAAEKAREASESAKKLEEEVKRLSQQETRAASLAQEAQEKAEAGGASVENLLNKAKDFGAGFSWEKLSSQITTSIQKPDEDEKPKVQLATVRGQAKARNLAPNKAVVKQTPQRSAAKPKVEKPKQTETPKEVRKVFGGLFKQETIYVDDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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