SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50920 | AT | Annotation by Michelle Graham. TAIR10: Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671 | SoyBase | E_val: 0 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1490 | KOG | GTP-binding protein CRFG/NOG1 (ODN superfamily) | JGI | ISS | |
| PTHR11702 | Panther | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11702:SF4 | Panther | GTP-BINDING PROTEIN YLF2-RELATED | JGI | ISS | |
| PF06858 | PFAM | Nucleolar GTP-binding protein 1 (NOG1) | JGI | ISS | |
| PF08155 | PFAM | NOGCT (NUC087) domain | JGI | ISS | |
| UniRef100_I1LJW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar GTP-binding protein 1 n=1 Tax=Glycine max RepID=I1LJW2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LJW2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nucleolar GTP-binding protein 1 n=1 Tax=Glycine max RepID=I1LJW2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g14190 not represented in the dataset |
Glyma11g14190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g06170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g133600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g14190.2 sequence type=transcript gene model=Glyma11g14190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCCGGGTTGGGTTGCAACTTAAAGTTTAAAACCCTCATTCTACCCTACTTCTTCTTTCCTTTGAGTCGGTGTGCAGCAGGGAGCTCTGCCGCCTCCAACAAAACAGAGTTCAGAACACAAACCCTCGAACCGAACGTTTTTGAGGGTTGATAGAGCACGATGGTTCAGTACAATTTTAAGAAGATTACCGTGGTGCCAAATGGGAAGGATGTGGTCGACATTATCCTCTCTCGCACCCAGCGTCAGACACCAACCGTTGTGCACAAAGGATATGCGATTTCACGGCTGCGCCAATTCTACATGCGCAAAGTGAAGTATACTCAGCAGAATTTTCACGACAAGCTCTCCACCATAATCGACGAGTTCCCCCGGCTTGACGACATTCATCCATTCTACGGTGATCTCCTCCATGTGCTCTACAACAAGGACCATTACAAGCTTGCTCTTGGCCAAATCAACACTGCCAGGAATCTCATTGGTAAGATTGCCAAAGACTATGTCAAGTTATTGAAGTACGGTGACTCGCTTTACCGGTGCAAGTGTCTTAAGGTTGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGGTTGGCCCGAGTTTGGCTTATTTAGAACAGGTCAGACAGCACATGGCTAGGCTTCCCTCTATTGATCCAAATACGAGGACTGTTTTGATCTGTGGATATCCTAATGTTGGTAAGAGCTCGTTCATTAACAAGATTACCAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACCAAGTCTCTCTTTGTGGGTCATACTGATTATAAATACCTGAGGTACCAAGTAATTGATACGCCAGGGATTTTGGACAGGCCTTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCAATCTTGTTTTTCTTGGACGTCTCTGGATCTTGTGGTTACAGTATTGCTCAGCAGGCAGCGCTGTTTCACAGCATTAAGTCTTTGTTTATGAACAAGCCGTTGATTATAGTCTGCAACAAGACTGACTTGCAGCCACTGGAGGGGATATCAGAGGAAGACATGAAGTTGGTCAATGAGATGAAAGCTGAAGCCTTGAAGACTCTAGTTGGTCAAGGAGGTGAGCCTACAGACAATAACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTAAAAAATGCAGCATGTGAGAGGTTATTGGATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAAATTAACGACTGCTTGAATAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCTCCATGTATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGCAAGCTGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGGATGAGAATGGTGGGGCGGGTGTATACTCAATGAACTTGAGGAAGAATTACATTTTAGCCGATGATGAATGGAAAGAGGATGTGCTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGACAGGAAGAAGCTGAGGATGATGATTTTGAGATTGATGGAACTGAATTGACACCCGAGCAGCAAGCAGCTTTAGCTGAGATCAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCATAGGATCAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGATAAGGACAAGCAGTTCACATCAGAAAGAATGGGAAGGCAACTGTCATCTTTGGGGCTTGATCCCAGTTTGGCAATTAAGAGAATGCACAGCAGATCTGTCTCTAGAGGTCGGAAAAGGGATAGATCGCCTGAAACAAGAAGTGCTGATGGTATGGATACTGATGGTGACACACCTAGCAAAAAACAGCGTCTGAGTAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAAGGCTTCAAGGATTCTGCTCAAAAGGTCAAGGCAATCAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCCAATGGAAAAACTGAGAGACGCTAGGACAGGGGATGCTGTTTAATGCATTTTAGAGGACACCTGTTGGCATTTTTCAGGGCTGCCAAAAAAAATTGTTATTTAATGTAAGTGTTTTGTTGGAGTTTAAGGTTCTGTGCTGGCAACATAGTTTACTTATACATCTCTGCATTTTATTATTGTTATCAAACTTGTCATTCTATAAGTTGCAACTTTACAGCTTTCTTTGAATCAAGGAAGCTGCTGTTTGAATTTTATGACTCAACATTGAGTGCTGTTATTGGAACTTGGAAGTTAGTTCCTTCTAGCTTGATTGCTCTTTCATCTCAACTCCCACATGTGGTTGACTTTGTTCTAGTATATTGTTCAAACTGGTTTAAATATTGTATGCAATATACAATAAAAGGCTCACGATATAGGATAGCACCTTATTGGTTCGTTGGGGGGGGGGAGGGGGTTAAACTGTTGGAAGGCCTTTATTGTATGCAAGGATAATATACATACTCAATGAAGAGCACATTATAGTGGTAGCATATAATTTGATCCTATGATTTGACTTGAGTTTAAGTAGTCACTTTTTTTTATCAACAAATGTTAATTTGTTAGAAATGTCACTTGGGAGAATTCAAGCCCGAATTACTGGACCAACATTATATCTTCTTAAGTAGTCAGGGGGATAAACTGTTGGAAGGCCTTTATTGTATGCAAGGATAATATACATACTCAATGAAGAGCACATTATAGTGGTAGCATATAATTTGATCCTATG
>Glyma11g14190.1 sequence type=CDS gene model=Glyma11g14190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCAGTACAATTTTAAGAAGATTACCGTGGTGCCAAATGGGAAGGATGTGGTCGACATTATCCTCTCTCGCACCCAGCGTCAGACACCAACCGTTGTGCACAAAGGATATGCGATTTCACGGCTGCGCCAATTCTACATGCGCAAAGTGAAGTATACTCAGCAGAATTTTCACGACAAGCTCTCCACCATAATCGACGAGTTCCCCCGGCTTGACGACATTCATCCATTCTACGGTGATCTCCTCCATGTGCTCTACAACAAGGACCATTACAAGCTTGCTCTTGGCCAAATCAACACTGCCAGGAATCTCATTGGTAAGATTGCCAAAGACTATGTCAAGTTATTGAAGTACGGTGACTCGCTTTACCGGTGCAAGTGTCTTAAGGTTGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGGTTGGCCCGAGTTTGGCTTATTTAGAACAGGTCAGACAGCACATGGCTAGGCTTCCCTCTATTGATCCAAATACGAGGACTGTTTTGATCTGTGGATATCCTAATGTTGGTAAGAGCTCGTTCATTAACAAGATTACCAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACCAAGTCTCTCTTTGTGGGTCATACTGATTATAAATACCTGAGGTACCAAGTAATTGATACGCCAGGGATTTTGGACAGGCCTTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCAATCTTGTTTTTCTTGGACGTCTCTGGATCTTGTGGTTACAGTATTGCTCAGCAGGCAGCGCTGTTTCACAGCATTAAGTCTTTGTTTATGAACAAGCCGTTGATTATAGTCTGCAACAAGACTGACTTGCAGCCACTGGAGGGGATATCAGAGGAAGACATGAAGTTGGTCAATGAGATGAAAGCTGAAGCCTTGAAGACTCTAGTTGGTCAAGGAGGTGAGCCTACAGACAATAACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTAAAAAATGCAGCATGTGAGAGGTTATTGGATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAAATTAACGACTGCTTGAATAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCTCCATGTATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGCAAGCTGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGGATGAGAATGGTGGGGCGGGTGTATACTCAATGAACTTGAGGAAGAATTACATTTTAGCCGATGATGAATGGAAAGAGGATGTGCTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGACAGGAAGAAGCTGAGGATGATGATTTTGAGATTGATGGAACTGAATTGACACCCGAGCAGCAAGCAGCTTTAGCTGAGATCAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCATAGGATCAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGATAAGGACAAGCAGTTCACATCAGAAAGAATGGGAAGGCAACTGTCATCTTTGGGGCTTGATCCCAGTTTGGCAATTAAGAGAATGCACAGCAGATCTGTCTCTAGAGGTCGGAAAAGGGATAGATCGCCTGAAACAAGAAGTGCTGATGGTATGGATACTGATGGTGACACACCTAGCAAAAAACAGCGTCTGAGTAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAAGGCTTCAAGGATTCTGCTCAAAAGGTCAAGGCAATCAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCCAATGGAAAAACTGAGAGACGCTAG >Glyma11g14190.2 sequence type=CDS gene model=Glyma11g14190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCAGTACAATTTTAAGAAGATTACCGTGGTGCCAAATGGGAAGGATGTGGTCGACATTATCCTCTCTCGCACCCAGCGTCAGACACCAACCGTTGTGCACAAAGGATATGCGATTTCACGGCTGCGCCAATTCTACATGCGCAAAGTGAAGTATACTCAGCAGAATTTTCACGACAAGCTCTCCACCATAATCGACGAGTTCCCCCGGCTTGACGACATTCATCCATTCTACGGTGATCTCCTCCATGTGCTCTACAACAAGGACCATTACAAGCTTGCTCTTGGCCAAATCAACACTGCCAGGAATCTCATTGGTAAGATTGCCAAAGACTATGTCAAGTTATTGAAGTACGGTGACTCGCTTTACCGGTGCAAGTGTCTTAAGGTTGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGGTTGGCCCGAGTTTGGCTTATTTAGAACAGGTCAGACAGCACATGGCTAGGCTTCCCTCTATTGATCCAAATACGAGGACTGTTTTGATCTGTGGATATCCTAATGTTGGTAAGAGCTCGTTCATTAACAAGATTACCAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACCAAGTCTCTCTTTGTGGGTCATACTGATTATAAATACCTGAGGTACCAAGTAATTGATACGCCAGGGATTTTGGACAGGCCTTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCAATCTTGTTTTTCTTGGACGTCTCTGGATCTTGTGGTTACAGTATTGCTCAGCAGGCAGCGCTGTTTCACAGCATTAAGTCTTTGTTTATGAACAAGCCGTTGATTATAGTCTGCAACAAGACTGACTTGCAGCCACTGGAGGGGATATCAGAGGAAGACATGAAGTTGGTCAATGAGATGAAAGCTGAAGCCTTGAAGACTCTAGTTGGTCAAGGAGGTGAGCCTACAGACAATAACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTAAAAAATGCAGCATGTGAGAGGTTATTGGATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAAATTAACGACTGCTTGAATAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCTCCATGTATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGCAAGCTGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGGATGAGAATGGTGGGGCGGGTGTATACTCAATGAACTTGAGGAAGAATTACATTTTAGCCGATGATGAATGGAAAGAGGATGTGCTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGACAGGAAGAAGCTGAGGATGATGATTTTGAGATTGATGGAACTGAATTGACACCCGAGCAGCAAGCAGCTTTAGCTGAGATCAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCATAGGATCAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGATAAGGACAAGCAGTTCACATCAGAAAGAATGGGAAGGCAACTGTCATCTTTGGGGCTTGATCCCAGTTTGGCAATTAAGAGAATGCACAGCAGATCTGTCTCTAGAGGTCGGAAAAGGGATAGATCGCCTGAAACAAGAAGTGCTGATGGTATGGATACTGATGGTGACACACCTAGCAAAAAACAGCGTCTGAGTAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAAGGCTTCAAGGATTCTGCTCAAAAGGTCAAGGCAATCAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCCAATGGAAAAACTGAGAGACGCTAG
>Glyma11g14190.1 sequence type=predicted peptide gene model=Glyma11g14190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQYNFKKITVVPNGKDVVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHDKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRVGPSLAYLEQVRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDLQPLEGISEEDMKLVNEMKAEALKTLVGQGGEPTDNNSVLLTMSTLTEEGVIAVKNAACERLLDQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPPCIPQAVLEAKAKQAAEKEKRKTEKDLEDENGGAGVYSMNLRKNYILADDEWKEDVLPEILDGHNVYDFIDPDILHRVEELEREEGMRQEEAEDDDFEIDGTELTPEQQAALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDKQFTSERMGRQLSSLGLDPSLAIKRMHSRSVSRGRKRDRSPETRSADGMDTDGDTPSKKQRLSRSLSRSRSVSRPPHEVVPGEGFKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSNGKTERR* >Glyma11g14190.2 sequence type=predicted peptide gene model=Glyma11g14190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQYNFKKITVVPNGKDVVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHDKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRVGPSLAYLEQVRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDLQPLEGISEEDMKLVNEMKAEALKTLVGQGGEPTDNNSVLLTMSTLTEEGVIAVKNAACERLLDQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPPCIPQAVLEAKAKQAAEKEKRKTEKDLEDENGGAGVYSMNLRKNYILADDEWKEDVLPEILDGHNVYDFIDPDILHRVEELEREEGMRQEEAEDDDFEIDGTELTPEQQAALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDKQFTSERMGRQLSSLGLDPSLAIKRMHSRSVSRGRKRDRSPETRSADGMDTDGDTPSKKQRLSRSLSRSRSVSRPPHEVVPGEGFKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSNGKTERR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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