Glyma11g14180 - SoyBase

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Report for Sequence Feature Glyma11g14180

Feature Type:	gene_model
Chromosome:	Gm11
Start:	10174367
stop:	10178541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g14180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51310	AT	Annotation by Michelle Graham. TAIR10: transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases \| chr1:19019185-19021735 REVERSE LENGTH=497	SoyBase	E_val: 0	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004808	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
KOG2805	KOG	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	JGI		ISS
PTHR11933	Panther	TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE	JGI		ISS
PF03054	PFAM	tRNA methyl transferase	JGI		ISS
UniRef100_B9RIE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RIE1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LJW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LJW0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g14180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g14180

Paralog	Evidence	Comments
Glyma12g06161	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g14180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g133500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g14180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g14180

Limit To All Plant Sequences

>Glyma11g14180.2   sequence type=transcript   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATACAGAAATCCGGGAAAGTGTGTTTCCTATCCTGAAACGTTTTCTTGGGAAACGGATGAGGTGTCTGAGTGGTGGAAGTGATGCTGAGGGTGGCGCTGCGATGGAACTCGATTTGGAGGCCAATGGCTTCTCTGCCACTAACTCCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCACCTTCAAGCTTTTTTGTCGACCTTCTTCTTCCGCCGTCGCGCACACCTCGCCTCCTCTCTCCGGCGACCTGGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTCCGAGTCGCGGTTCTTGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCTGGCCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTGTGCAATACAAGAATTAAGTTTGGTGCATTCTTGGATGCGATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTTCTGATCGGAGGGATGAACCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGAACAAAACAGACTGACGTGTAAGAGGAATGCAGCTTCCATTTTCCCTTTCAATTGGCCACAACAGAGCATTGGCAAATGGGGGTATACATGCAGATTTTCTGATCCTTCGTTCTGTAACTTTTTTATATACATGTTTAGGGAAACAAGAAGTATTTTATAGAGAGAAGGATAGCGATTTAAGGTAGGTGAGAAATTAGTAGCTTCTATTATTCGGTGTTTCCAATTAAAATGTGTATATACTTTGTCATGGTTTGCTTGATACTTTATTCAGTTTATTGACAAATGTACCTTAAGATGCAATTATAAAATGAAGAATTTCTTAATTTGGAATTTAATCAATGAAAAGATATAATACTATGGCATGGAGCAA

>Glyma11g14180.3   sequence type=transcript   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATACAGAAATCCGGGAAAGTGTGTTTCCTATCCTGAAACGTTTTCTTGGGAAACGGATGAGGTGTCTGAGTGGTGGAAGTGATGCTGAGGGTGGCGCTGCGATGGAACTCGATTTGGAGGCCAATGGCTTCTCTGCCACTAACTCCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCACCTTCAAGCTTTTTTGTCGACCTTCTTCTTCCGCCGTCGCGCACACCTCGCCTCCTCTCTCCGGCGACCTGGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTCCGAGTCGCGGTTCTTGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCTGGCCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGAACAAAACAGACTGACGTGTAAGAGGAATGCAGCTTCCATTTTCCCTTTCAATTGGCCACAACAGAGCATTGGCAAATGGGGGTATACATGCAGATTTTCTGATCCTTCGTTCTGTAACTTTTTTATATACATGTTTAGGGAAACAAGAAGTATTTTATAGAGAGAAGGATAGCGATTTAAGGTAGGTGAGAAATTAGTAGCTTCTATTATTCGGTGTTTCCAATTAAAATGTGTATATACTTTGTCATGGTTTGCTTGATACTTTATTCAGTTTATTGACAAATGTACCTTAAGATGCAATTATAAAATGAAGAATTTCTTAATTTGGAATTTAATCAATGAAAAGATATAATACTATGGCATGGAGCAA

Coding sequences of Glyma11g14180

Limit To All Plant Sequences

>Glyma11g14180.1   sequence type=CDS   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAGGGTGGCGCTGCGATGGAACTCGATTTGGAGGCCAATGGCTTCTCTGCCACTAACTCCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCACCTTCAAGCTTTTTTGTCGACCTTCTTCTTCCGCCGTCGCGCACACCTCGCCTCCTCTCTCCGGCGACCTGGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTCCGAGTCGCGGTTCTTGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCTGGCCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTGTGCAATACAAGAATTAAGTTTGGTGCATTCTTGGATGCGATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTTCTGATCGGAGGGATGAACCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGA

>Glyma11g14180.2   sequence type=CDS   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCAAATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTGTGCAATACAAGAATTAAGTTTGGTGCATTCTTGGATGCGATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTTCTGATCGGAGGGATGAACCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGA

>Glyma11g14180.3   sequence type=CDS   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCAAATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGACGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTGTCATACTAGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTTTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGCGGGTTGCCCCCAGGCCAGACAACTCAGCTCCAATGCAAGGTGAGACATGGTCCTGGATTTTATGATTGTAGCTTACAAATGGAAGTCGAAGCTGATGGCCAATGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCATTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCACAAGGGAATAAGAAATTAAAGAGTTGCTGGCACTGA

Predicted protein sequences of Glyma11g14180

Limit To All Plant Sequences

>Glyma11g14180.1   sequence type=predicted peptide   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRVALRWNSIWRPMASLPLTPFTCQNLHTLNPRPRCRTFKLFCRPSSSAVAHTSPPLSGDLDRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCSDRRDEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVCDSAELASKTSQGNKKLKSCWH*

>Glyma11g14180.2   sequence type=predicted peptide   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPNFENFWSECPWEDDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCSDRRDEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVCDSAELASKTSQGNKKLKSCWH*

>Glyma11g14180.3   sequence type=predicted peptide   gene model=Glyma11g14180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPNFENFWSECPWEDDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVCDSAELASKTSQGNKKLKSCWH*

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