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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12080 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1191 | KOG | Mitochondrial GTPase | JGI | ISS | |
| PTHR11649 | Panther | MSS1/TRME-RELATED GTP-BINDING PROTEIN | JGI | ISS | |
| PTHR11649:SF5 | Panther | GTP-BINDING PROTEIN ERG | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| UniRef100_I1LJV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTPase Der (Fragment) n=1 Tax=Glycine max RepID=I1LJV9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LQJ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQJ5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g14171 not represented in the dataset |
Glyma11g14171 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g06150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g133400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g14171.1 sequence type=CDS gene model=Glyma11g14171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGCACTCTAACTCTAATACCTATCTCTTACACTTTCGCTAAAACCCTAAACCCCATTTTCCCTTTCAACAACACTCTTCCCTTCTCCTCTTCAATCCTTTATCGCCAGAAGCTCACTCGCCGCACCCTATCCTGTTCCGTCCTCCGTCCTACCGCCGGTGAATTCTCCGGCAGCGTCGATGATGAAGAATCCGATGATTTGGACGACCTCGATGTCGTTGCCCTCGAGCAAGAAGCGAAGGACGCTGTCCAAGCGTATTCAAGCTCTCTGTCTCAGATTTTGAGCATTGCTTTTGCTTGTCTTTATAGCGAGTCTTCAATAACGACCTTTCTATGTTTGGTGATTTCAGAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCCCGCAGGAAGAGTCCACGTAGAACAAAAATTGTTTGTATGACATTCAGTTTACTTTTGTTATTACGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATATAATCGTCTTGTTGGGGGAAACAGGGCAATTGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATACGGTCGATCGTATTGGGGAGAGCATGAATTCATGGTAGTGGACACCGGTGGGGTTATAACCGTTTCAAAATCACAAGCTACTGTTATGGAAGAGCTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAGGCAGCTGTTGCCTGGATGCCCTCAATGATTGAGAGACAAGCAACTGCAGCTGTGGAAGAATCATCTGTGATTATTTTCCTGGTTGATGGTCAGGCAGGTCTAACAGCAGCTGATGAGGAGATTGCTGATTGGCTACGTAAAAAATACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCGTCTGAATTTTGGTCCCTTGGTTACAGAACTGTTATCTGCAAACTTGATCTTGTTCTTCACCTTATCATCAATGTTTACAAACCACTCTCTATGTCCGATCATAAATCTAATAATCTTGTTGAAGAAGAGGATTATGTTCCGGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTTGTTGGTGAGGACAGAACAATAGTCAGTCCCATCAGTTGCACTACCCGTGATGCTATTGATACTGAATTTACTGGACCAGATGGACAGAAGTTCCAACTTATTGATACTGCTGGAATCAGGAAAAGATCAGCGATTGCTTCAGCTGGGACATTTTGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCATCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGACTGGGCTCCAATAGTTTATTCTACTGTTGTAGCTGGTCATAGTGTTGGCAAGATTATTGTGGCTGCTAGTGAAGTTGAAAAGGAGAGATCAAGAAGACTTGGGACTTCTACATTGAATCAAGTAGTTCAGGAAGCAGTAGGTTTTAAGCCTCCTCCCAGGACACGTGGTGGAAAAGGAGGGCGTGTTTACTATTGTACTCAGGCTGCTATAAAGCCACCTACATTTGTGTTCTTTGTCAATGATGGAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGCAACATCGTTCAGATGCAGGTTTTTTTGGTACACCCATTCGACTTCTCTGGCGCAGCAGAAGGAAAGTGGGAAATGATGAAAGTCGGTATTTGTAG
>Glyma11g14171.1 sequence type=predicted peptide gene model=Glyma11g14171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARTLTLIPISYTFAKTLNPIFPFNNTLPFSSSILYRQKLTRRTLSCSVLRPTAGEFSGSVDDEESDDLDDLDVVALEQEAKDAVQAYSSSLSQILSIAFACLYSESSITTFLCLVISEDEEKSDRKESAQSRRKSPRRTKIVCMTFSLLLLLRVAIVGRPNVGKSALYNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVAWMPSMIERQATAAVEESSVIIFLVDGQAGLTAADEEIADWLRKKYSDKYVILAVNKCESPRKRIMQASEFWSLGYRTVICKLDLVLHLIINVYKPLSMSDHKSNNLVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISCTTRDAIDTEFTGPDGQKFQLIDTAGIRKRSAIASAGTFCAIRRSDVVALVIEAMACITEQEYNIAERIEKEGKGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLDWAPIVYSTVVAGHSVGKIIVAASEVEKERSRRLGTSTLNQVVQEAVGFKPPPRTRGGKGGRVYYCTQAAIKPPTFVFFVNDGKLFPETYRRYMEKQHRSDAGFFGTPIRLLWRSRRKVGNDESRYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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