Glyma11g14050 - SoyBase

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Report for Sequence Feature Glyma11g14050

Feature Type:	gene_model
Chromosome:	Gm11
Start:	10088122
stop:	10090964
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g14050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51200	AT	Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein \| chr1:18985690-18986211 FORWARD LENGTH=173	SoyBase	E_val: 4.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3173	KOG	Predicted Zn-finger protein	JGI		ISS
PTHR10634	Panther	PRK1-ASSOCIATED ZINC FINGER PROTEIN	JGI		ISS
PF01428	PFAM	AN1-like Zinc finger	JGI		ISS
PF01754	PFAM	A20-like zinc finger	JGI		ISS
UniRef100_A2YEZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger A20 and AN1 domain-containing stress-associated protein 8 n=3 Tax=Oryza sativa RepID=SAP8_ORYSI	SoyBase	E_val: 6.00E-79	ISS
UniRef100_I1LJU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LJU7_SOYBN	SoyBase	E_val: 1.00E-136	ISS

Expression Patterns of Glyma11g14050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g14050

Paralog	Evidence	Comments
Glyma12g06016	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g14050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g132000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g14050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g14050

Limit To All Plant Sequences

>Glyma11g14050.2   sequence type=transcript   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGCATCCTTCTTTCTCTCTCTCTCCTCCTCGATCCCAATTCCACTAGGGTTAGGGTTCCGTTACCCTTATCTCCTTCTCAATTCTTGCTTTCCTCTTTAATAATCCGCTCTCGTATTCGTTTATTAATTGATCATTCTTTCTCGTTTTGTTCTTTTTCGCTGAATCCAGGATTCAATTCCGATGCGATTCCGAGCTTGTTAGATCCACGACAACGTTTCGTTTCCCAGATTCTTTTGTAAAAAAAAATAATCTTCCTTTGCCCAACAGGTAAGTTGGAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAAGATTTGAAGTCAAAGTTTCATGGCCTGAGATGAAGTTATGCATAATTTCATCATGAAATGATCCGAGTTTCCTTCACATTTTATTTGGTGTTCTTATTATATTGTTATATGTGGTGGGTGACTTGGAGTTATTGGACATCTCTGCAATTTGAAGGACTCTTTCATGTGATTGGCGAAAATATATATGTTGGCCACAGTGTTTAAGTTTTTAAGTGCTGGTTTGGTGAAAGTTGGTTGGTGTTGTTAGCTTTGTAATGCATCTATCCTGTATCAGAATGGTATGTGCAATTTAAAGATGGTTTCAAGAGCATCCGTGGACATGTGGTAGATTGTAATTATTGTGGGCTATCTATGAATTATTTTCGATATGCTAGAATTTTCAGAAATTGC

>Glyma11g14050.3   sequence type=transcript   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAATTCTCACTAAACGGAGTTCGTTGGAGAGAGAGAGAGAGAGAGAGAGAAGTAACAGCCCTTTTAAATACCAAACACTGACACACACAAACGACGCATCCTTCTTTCTCTCTCTCTCCTCCTCGATCCCAATTCCACTAGGGATTCAATTCCGATGCGATTCCGAGCTTGTTAGATCCACGACAACGTTTCGTTTCCCAGATTCTTTTGTAAAAAAAAATAATCTTCCTTTGCCCAACAGGTAAGTTGGAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAAGATTTGAAGTCAAAGTTTCATGGCCTGAGATGAAGTTATGCATAATTTCATCATGAAATGATCCGAGTTTCCTTCACATTTTATTTGGTGTTCTTATTATATTGTTATATGTGGTGGGTGACTTGGAGTTATTGGACATCTCTGCAATTTGAAGGACTCTTTCATGTGATTGGCGAAAATATATATGTTGGCCACAGTGTTTAAGTTTTTAAGTGCTGGTTTGGTGAAAGTTGGTTGGTGTTGTTAGCTTTGTAATGCATCTATCCTGTATCAGAATGGTATGTGCAATTTAAAGATGGTTTCAAGAGCATCCGTGGACATGTGGTAGATTGTAATTATTGTGGGCTATCTATGAATTATTTTCGATATGCTAGAATTTTCAGAAATTGCTTAGTTGATCACTTATTTAATATAGTAACTACCAAAAAAATAATGGAGTTGGGTTAATATTTG

>Glyma11g14050.4   sequence type=transcript   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAGGTATTGGACACTAGTTGAAGAGGGGTCAATGGGCCATGTATGCATGTGAAAAGAAATCTATCTAGTAACACTAAAAACAGGACTAGCTGGGAAAAGGAACCACTGTACTGCTCACTGCTATCTTATAATGAGTAAGTTGGAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAAGATTTGAAGTCAAAGTTTCATGGCCTGAGATGAAGTTATGCATAATTTCATCATGAAATGATCCGAGTTTCCTTCACATTTTATTTGGTGTTCTTATTATATTGTTATATGTGGTGGGTGACTTGGAGTTATTGGACATCTCTGCAATTTGAAGGACTCTTTCATGTGATTGGCGAAAATATATATGTTGGCCACAGTGTTTAAGTTTTTAAGTGCTGGTTTGGTGAAAGTTGGTTGGTGTTGTTAGCTTTGTAATGCATCTATCCTGTATCAGAATGGTATGTGCAATTTAAAGATGGTTTCAAGAGCATCCGTGGACATGTGGTAGATTGTAATTATTGTGGGCTATCTATGAATTATTTTCGATATGCTAGAATTTTCAGAAATTGC

Coding sequences of Glyma11g14050

Limit To All Plant Sequences

>Glyma11g14050.1   sequence type=CDS   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTATGTATCATTTGCGCAGGTAAGTTGGAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAA

>Glyma11g14050.2   sequence type=CDS   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAA

>Glyma11g14050.3   sequence type=CDS   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAA

>Glyma11g14050.4   sequence type=CDS   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCTTCAAGCAGCACTGAAAAGGAACCTGTTGTTGCCGCTGCTGCTGCTAATGTTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAAGGGAGTGGTGAGGCAAAGCTGAAGGATGGACCAAAACGCTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAA

Predicted protein sequences of Glyma11g14050

Limit To All Plant Sequences

>Glyma11g14050.1   sequence type=predicted peptide   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYVSFAQVSWKKMDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAAANVDIPVIPVEPKTVSVQPLFGSGPEGSGEAKLKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI*

>Glyma11g14050.2   sequence type=predicted peptide   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAAANVDIPVIPVEPKTVSVQPLFGSGPEGSGEAKLKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI*

>Glyma11g14050.3   sequence type=predicted peptide   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAAANVDIPVIPVEPKTVSVQPLFGSGPEGSGEAKLKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI*

>Glyma11g14050.4   sequence type=predicted peptide   gene model=Glyma11g14050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAAANVDIPVIPVEPKTVSVQPLFGSGPEGSGEAKLKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI*

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